Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1292

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1290 and Rru_A1291 are separated by 2 nucleotidesRru_A1291 and Rru_A1292 are separated by 1 nucleotidesRru_A1292 and Rru_A1293 are separated by 68 nucleotides Rru_A1290: Rru_A1290 - hypothetical protein (NCBI), at 1,523,931 to 1,524,395 _A1290 Rru_A1291: Rru_A1291 - ABC transporter component (NCBI), at 1,524,398 to 1,525,063 _A1291 Rru_A1292: Rru_A1292 - Protein of unknown function DUF214 (NCBI), at 1,525,065 to 1,526,327 _A1292 Rru_A1293: Rru_A1293 - chemotaxis sensory transducer (NCBI), at 1,526,396 to 1,528,084 _A1293 Position (kb) 1525 1526 1527Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1524.179 kb on - strand, within Rru_A1290at 1524.179 kb on - strand, within Rru_A1290at 1525.347 kb on + strand, within Rru_A1292at 1525.495 kb on + strand, within Rru_A1292at 1525.495 kb on + strand, within Rru_A1292at 1525.496 kb on - strand, within Rru_A1292at 1525.496 kb on - strand, within Rru_A1292at 1525.496 kb on - strand, within Rru_A1292at 1525.496 kb on - strand, within Rru_A1292at 1525.569 kb on + strand, within Rru_A1292at 1525.842 kb on + strand, within Rru_A1292at 1525.843 kb on - strand, within Rru_A1292at 1525.843 kb on - strand, within Rru_A1292at 1525.843 kb on - strand, within Rru_A1292at 1525.844 kb on + strand, within Rru_A1292at 1525.844 kb on + strand, within Rru_A1292at 1525.845 kb on - strand, within Rru_A1292at 1525.845 kb on - strand, within Rru_A1292at 1525.845 kb on - strand, within Rru_A1292at 1525.845 kb on - strand, within Rru_A1292at 1525.845 kb on - strand, within Rru_A1292at 1525.845 kb on - strand, within Rru_A1292at 1525.860 kb on + strand, within Rru_A1292at 1525.861 kb on - strand, within Rru_A1292at 1526.146 kb on - strand, within Rru_A1292at 1526.233 kb on - strandat 1526.233 kb on - strandat 1526.393 kb on + strandat 1526.394 kb on - strandat 1526.397 kb on + strandat 1526.644 kb on + strand, within Rru_A1293at 1526.645 kb on - strand, within Rru_A1293at 1526.645 kb on - strand, within Rru_A1293at 1526.885 kb on + strand, within Rru_A1293at 1526.886 kb on - strand, within Rru_A1293

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,524,179 - Rru_A1290 0.53 +1.5
1,524,179 - Rru_A1290 0.53 -1.6
1,525,347 + Rru_A1292 0.22 -2.8
1,525,495 + Rru_A1292 0.34 +0.5
1,525,495 + Rru_A1292 0.34 -1.9
1,525,496 - Rru_A1292 0.34 -3.7
1,525,496 - Rru_A1292 0.34 +0.4
1,525,496 - Rru_A1292 0.34 +0.2
1,525,496 - Rru_A1292 0.34 -4.7
1,525,569 + Rru_A1292 0.40 -0.5
1,525,842 + Rru_A1292 0.62 +0.3
1,525,843 - Rru_A1292 0.62 -2.5
1,525,843 - Rru_A1292 0.62 -1.0
1,525,843 - Rru_A1292 0.62 -0.9
1,525,844 + Rru_A1292 0.62 -1.4
1,525,844 + Rru_A1292 0.62 +0.6
1,525,845 - Rru_A1292 0.62 +0.6
1,525,845 - Rru_A1292 0.62 +1.4
1,525,845 - Rru_A1292 0.62 +0.1
1,525,845 - Rru_A1292 0.62 -2.5
1,525,845 - Rru_A1292 0.62 -1.1
1,525,845 - Rru_A1292 0.62 -2.9
1,525,860 + Rru_A1292 0.63 -0.6
1,525,861 - Rru_A1292 0.63 +0.8
1,526,146 - Rru_A1292 0.86 +0.0
1,526,233 - -0.2
1,526,233 - -0.1
1,526,393 + -1.9
1,526,394 - -1.6
1,526,397 + +0.1
1,526,644 + Rru_A1293 0.15 +1.3
1,526,645 - Rru_A1293 0.15 +1.8
1,526,645 - Rru_A1293 0.15 +0.1
1,526,885 + Rru_A1293 0.29 +0.6
1,526,886 - Rru_A1293 0.29 +0.8

Or see this region's nucleotide sequence