Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1290 and Rru_A1291 are separated by 2 nucleotides Rru_A1291 and Rru_A1292 are separated by 1 nucleotides Rru_A1292 and Rru_A1293 are separated by 68 nucleotides
Rru_A1290: Rru_A1290 - hypothetical protein (NCBI), at 1,523,931 to 1,524,395
_A1290
Rru_A1291: Rru_A1291 - ABC transporter component (NCBI), at 1,524,398 to 1,525,063
_A1291
Rru_A1292: Rru_A1292 - Protein of unknown function DUF214 (NCBI), at 1,525,065 to 1,526,327
_A1292
Rru_A1293: Rru_A1293 - chemotaxis sensory transducer (NCBI), at 1,526,396 to 1,528,084
_A1293
Position (kb)
1525
1526
1527 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1524.179 kb on - strand, within Rru_A1290 at 1524.179 kb on - strand, within Rru_A1290 at 1525.347 kb on + strand, within Rru_A1292 at 1525.495 kb on + strand, within Rru_A1292 at 1525.495 kb on + strand, within Rru_A1292 at 1525.496 kb on - strand, within Rru_A1292 at 1525.496 kb on - strand, within Rru_A1292 at 1525.496 kb on - strand, within Rru_A1292 at 1525.496 kb on - strand, within Rru_A1292 at 1525.569 kb on + strand, within Rru_A1292 at 1525.842 kb on + strand, within Rru_A1292 at 1525.843 kb on - strand, within Rru_A1292 at 1525.843 kb on - strand, within Rru_A1292 at 1525.843 kb on - strand, within Rru_A1292 at 1525.844 kb on + strand, within Rru_A1292 at 1525.844 kb on + strand, within Rru_A1292 at 1525.845 kb on - strand, within Rru_A1292 at 1525.845 kb on - strand, within Rru_A1292 at 1525.845 kb on - strand, within Rru_A1292 at 1525.845 kb on - strand, within Rru_A1292 at 1525.845 kb on - strand, within Rru_A1292 at 1525.845 kb on - strand, within Rru_A1292 at 1525.860 kb on + strand, within Rru_A1292 at 1525.861 kb on - strand, within Rru_A1292 at 1526.146 kb on - strand, within Rru_A1292 at 1526.233 kb on - strand at 1526.233 kb on - strand at 1526.393 kb on + strand at 1526.394 kb on - strand at 1526.397 kb on + strand at 1526.644 kb on + strand, within Rru_A1293 at 1526.645 kb on - strand, within Rru_A1293 at 1526.645 kb on - strand, within Rru_A1293 at 1526.885 kb on + strand, within Rru_A1293 at 1526.886 kb on - strand, within Rru_A1293
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 1,524,179 - Rru_A1290 0.53 +1.5 1,524,179 - Rru_A1290 0.53 -1.6 1,525,347 + Rru_A1292 0.22 -2.8 1,525,495 + Rru_A1292 0.34 +0.5 1,525,495 + Rru_A1292 0.34 -1.9 1,525,496 - Rru_A1292 0.34 -3.7 1,525,496 - Rru_A1292 0.34 +0.4 1,525,496 - Rru_A1292 0.34 +0.2 1,525,496 - Rru_A1292 0.34 -4.7 1,525,569 + Rru_A1292 0.40 -0.5 1,525,842 + Rru_A1292 0.62 +0.3 1,525,843 - Rru_A1292 0.62 -2.5 1,525,843 - Rru_A1292 0.62 -1.0 1,525,843 - Rru_A1292 0.62 -0.9 1,525,844 + Rru_A1292 0.62 -1.4 1,525,844 + Rru_A1292 0.62 +0.6 1,525,845 - Rru_A1292 0.62 +0.6 1,525,845 - Rru_A1292 0.62 +1.4 1,525,845 - Rru_A1292 0.62 +0.1 1,525,845 - Rru_A1292 0.62 -2.5 1,525,845 - Rru_A1292 0.62 -1.1 1,525,845 - Rru_A1292 0.62 -2.9 1,525,860 + Rru_A1292 0.63 -0.6 1,525,861 - Rru_A1292 0.63 +0.8 1,526,146 - Rru_A1292 0.86 +0.0 1,526,233 - -0.2 1,526,233 - -0.1 1,526,393 + -1.9 1,526,394 - -1.6 1,526,397 + +0.1 1,526,644 + Rru_A1293 0.15 +1.3 1,526,645 - Rru_A1293 0.15 +1.8 1,526,645 - Rru_A1293 0.15 +0.1 1,526,885 + Rru_A1293 0.29 +0.6 1,526,886 - Rru_A1293 0.29 +0.8
Or see this region's nucleotide sequence