Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1165

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1163 and Rru_A1164 overlap by 4 nucleotidesRru_A1164 and Rru_A1165 are separated by 17 nucleotidesRru_A1165 and Rru_A1166 are separated by 16 nucleotidesRru_A1166 and Rru_A1167 overlap by 4 nucleotides Rru_A1163: Rru_A1163 - Nickel-dependent hydrogenase b-type cytochrome subunit (NCBI), at 1,381,364 to 1,382,083 _A1163 Rru_A1164: Rru_A1164 - Peptidase M52, hydrogenase expression/formation protein (NCBI), at 1,382,080 to 1,382,676 _A1164 Rru_A1165: Rru_A1165 - Hydrogenase expression/formation protein (HUPF/HYPC) (NCBI), at 1,382,694 to 1,383,065 _A1165 Rru_A1166: Rru_A1166 - hydrogenase expression/formation protein hupH (NCBI), at 1,383,082 to 1,383,858 _A1166 Rru_A1167: Rru_A1167 - putative hydrogenase expression/formation protein HupK (NCBI), at 1,383,855 to 1,385,075 _A1167 Position (kb) 1382 1383 1384Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1381.731 kb on - strand, within Rru_A1163at 1381.760 kb on + strand, within Rru_A1163at 1381.761 kb on - strand, within Rru_A1163at 1381.772 kb on - strand, within Rru_A1163at 1381.851 kb on - strand, within Rru_A1163at 1381.851 kb on - strand, within Rru_A1163at 1381.991 kb on + strand, within Rru_A1163at 1381.992 kb on - strand, within Rru_A1163at 1381.992 kb on - strand, within Rru_A1163at 1382.225 kb on + strand, within Rru_A1164at 1382.226 kb on - strand, within Rru_A1164at 1382.270 kb on - strand, within Rru_A1164at 1382.662 kb on + strandat 1382.693 kb on + strandat 1382.693 kb on + strandat 1382.693 kb on + strandat 1382.694 kb on - strandat 1382.694 kb on - strandat 1382.730 kb on - strandat 1383.165 kb on + strand, within Rru_A1166at 1383.165 kb on + strand, within Rru_A1166at 1383.166 kb on - strand, within Rru_A1166at 1383.166 kb on - strand, within Rru_A1166at 1383.166 kb on - strand, within Rru_A1166at 1383.166 kb on - strand, within Rru_A1166at 1383.166 kb on - strand, within Rru_A1166at 1383.359 kb on + strand, within Rru_A1166at 1383.360 kb on - strand, within Rru_A1166at 1383.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,381,731 - Rru_A1163 0.51 +0.7
1,381,760 + Rru_A1163 0.55 +0.2
1,381,761 - Rru_A1163 0.55 +0.3
1,381,772 - Rru_A1163 0.57 +0.0
1,381,851 - Rru_A1163 0.68 +1.0
1,381,851 - Rru_A1163 0.68 -0.3
1,381,991 + Rru_A1163 0.87 -1.3
1,381,992 - Rru_A1163 0.87 -2.1
1,381,992 - Rru_A1163 0.87 +0.1
1,382,225 + Rru_A1164 0.24 -0.7
1,382,226 - Rru_A1164 0.24 +1.8
1,382,270 - Rru_A1164 0.32 -0.8
1,382,662 + -0.1
1,382,693 + -3.0
1,382,693 + -0.2
1,382,693 + -0.3
1,382,694 - -0.3
1,382,694 - -0.3
1,382,730 - +0.5
1,383,165 + Rru_A1166 0.11 +0.7
1,383,165 + Rru_A1166 0.11 +0.7
1,383,166 - Rru_A1166 0.11 +0.8
1,383,166 - Rru_A1166 0.11 -0.5
1,383,166 - Rru_A1166 0.11 +0.5
1,383,166 - Rru_A1166 0.11 +0.3
1,383,166 - Rru_A1166 0.11 -1.1
1,383,359 + Rru_A1166 0.36 -2.3
1,383,360 - Rru_A1166 0.36 +0.7
1,383,828 - +0.9

Or see this region's nucleotide sequence