Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1116

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1115 and Rru_A1116 are separated by 144 nucleotidesRru_A1116 and Rru_A1117 are separated by 183 nucleotides Rru_A1115: Rru_A1115 - Transcriptional Regulator, XRE family (NCBI), at 1,310,195 to 1,311,133 _A1115 Rru_A1116: Rru_A1116 - Transcriptional Regulator, TetR family (NCBI), at 1,311,278 to 1,311,832 _A1116 Rru_A1117: Rru_A1117 - Secretion protein HlyD (NCBI), at 1,312,016 to 1,313,119 _A1117 Position (kb) 1311 1312Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1310.368 kb on + strand, within Rru_A1115at 1310.368 kb on + strand, within Rru_A1115at 1310.368 kb on + strand, within Rru_A1115at 1310.369 kb on - strand, within Rru_A1115at 1310.369 kb on - strand, within Rru_A1115at 1310.369 kb on - strand, within Rru_A1115at 1310.376 kb on - strand, within Rru_A1115at 1310.376 kb on - strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.401 kb on + strand, within Rru_A1115at 1310.401 kb on + strand, within Rru_A1115at 1310.404 kb on - strand, within Rru_A1115at 1310.404 kb on - strand, within Rru_A1115at 1310.404 kb on - strand, within Rru_A1115at 1310.404 kb on - strand, within Rru_A1115at 1310.582 kb on + strand, within Rru_A1115at 1310.582 kb on + strand, within Rru_A1115at 1310.582 kb on + strand, within Rru_A1115at 1310.582 kb on + strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.620 kb on + strand, within Rru_A1115at 1310.621 kb on - strand, within Rru_A1115at 1310.771 kb on + strand, within Rru_A1115at 1310.772 kb on - strand, within Rru_A1115at 1310.797 kb on + strand, within Rru_A1115at 1310.797 kb on + strand, within Rru_A1115at 1310.798 kb on - strand, within Rru_A1115at 1310.798 kb on - strand, within Rru_A1115at 1310.798 kb on - strand, within Rru_A1115at 1310.798 kb on - strand, within Rru_A1115at 1310.981 kb on + strand, within Rru_A1115at 1310.981 kb on + strand, within Rru_A1115at 1310.981 kb on + strand, within Rru_A1115at 1310.982 kb on - strand, within Rru_A1115at 1311.164 kb on + strandat 1311.164 kb on + strandat 1311.165 kb on - strandat 1311.165 kb on - strandat 1311.165 kb on - strandat 1311.170 kb on + strandat 1311.226 kb on + strandat 1311.290 kb on - strandat 1311.298 kb on + strandat 1311.298 kb on + strandat 1311.299 kb on - strandat 1311.299 kb on - strandat 1311.310 kb on + strandat 1311.413 kb on + strand, within Rru_A1116at 1311.414 kb on - strand, within Rru_A1116at 1311.463 kb on + strand, within Rru_A1116at 1311.463 kb on + strand, within Rru_A1116at 1311.463 kb on + strand, within Rru_A1116at 1311.463 kb on + strand, within Rru_A1116at 1311.463 kb on + strand, within Rru_A1116at 1311.464 kb on - strand, within Rru_A1116at 1311.464 kb on - strand, within Rru_A1116at 1311.464 kb on - strand, within Rru_A1116at 1311.465 kb on + strand, within Rru_A1116at 1311.465 kb on + strand, within Rru_A1116at 1311.465 kb on + strand, within Rru_A1116at 1311.465 kb on + strand, within Rru_A1116at 1311.466 kb on - strand, within Rru_A1116at 1311.466 kb on - strand, within Rru_A1116at 1311.466 kb on - strand, within Rru_A1116at 1311.466 kb on - strand, within Rru_A1116at 1311.514 kb on + strand, within Rru_A1116at 1311.679 kb on + strand, within Rru_A1116at 1311.679 kb on + strand, within Rru_A1116at 1311.710 kb on + strand, within Rru_A1116at 1311.710 kb on + strand, within Rru_A1116at 1311.731 kb on + strand, within Rru_A1116at 1311.732 kb on - strand, within Rru_A1116at 1311.807 kb on + strandat 1311.807 kb on + strandat 1311.807 kb on + strandat 1311.807 kb on + strandat 1311.807 kb on + strandat 1311.807 kb on + strandat 1311.808 kb on - strandat 1311.808 kb on - strandat 1311.819 kb on - strandat 1311.831 kb on - strandat 1311.948 kb on + strandat 1311.948 kb on + strandat 1311.949 kb on - strandat 1311.949 kb on - strandat 1311.949 kb on - strandat 1311.955 kb on + strandat 1311.956 kb on - strandat 1312.156 kb on + strand, within Rru_A1117at 1312.156 kb on + strand, within Rru_A1117at 1312.283 kb on - strand, within Rru_A1117at 1312.318 kb on + strand, within Rru_A1117at 1312.340 kb on + strand, within Rru_A1117at 1312.340 kb on + strand, within Rru_A1117at 1312.431 kb on - strand, within Rru_A1117at 1312.431 kb on - strand, within Rru_A1117at 1312.431 kb on - strand, within Rru_A1117at 1312.432 kb on + strand, within Rru_A1117at 1312.432 kb on + strand, within Rru_A1117at 1312.432 kb on + strand, within Rru_A1117at 1312.433 kb on - strand, within Rru_A1117at 1312.433 kb on - strand, within Rru_A1117at 1312.676 kb on + strand, within Rru_A1117at 1312.677 kb on - strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,310,368 + Rru_A1115 0.18 +1.8
1,310,368 + Rru_A1115 0.18 +1.4
1,310,368 + Rru_A1115 0.18 -3.2
1,310,369 - Rru_A1115 0.19 -2.4
1,310,369 - Rru_A1115 0.19 +0.4
1,310,369 - Rru_A1115 0.19 -1.2
1,310,376 - Rru_A1115 0.19 -0.1
1,310,376 - Rru_A1115 0.19 +1.4
1,310,377 + Rru_A1115 0.19 +0.7
1,310,377 + Rru_A1115 0.19 -1.0
1,310,377 + Rru_A1115 0.19 -4.1
1,310,377 + Rru_A1115 0.19 +0.1
1,310,377 + Rru_A1115 0.19 +0.4
1,310,377 + Rru_A1115 0.19 +0.7
1,310,378 - Rru_A1115 0.19 -0.4
1,310,378 - Rru_A1115 0.19 -0.6
1,310,378 - Rru_A1115 0.19 -1.2
1,310,378 - Rru_A1115 0.19 +0.2
1,310,378 - Rru_A1115 0.19 -0.1
1,310,378 - Rru_A1115 0.19 -0.3
1,310,378 - Rru_A1115 0.19 +0.7
1,310,401 + Rru_A1115 0.22 +1.4
1,310,401 + Rru_A1115 0.22 +0.3
1,310,404 - Rru_A1115 0.22 -0.4
1,310,404 - Rru_A1115 0.22 +0.2
1,310,404 - Rru_A1115 0.22 -1.7
1,310,404 - Rru_A1115 0.22 -1.1
1,310,582 + Rru_A1115 0.41 +1.5
1,310,582 + Rru_A1115 0.41 +0.4
1,310,582 + Rru_A1115 0.41 +0.5
1,310,582 + Rru_A1115 0.41 -2.9
1,310,583 - Rru_A1115 0.41 +0.1
1,310,583 - Rru_A1115 0.41 -2.8
1,310,583 - Rru_A1115 0.41 -1.5
1,310,583 - Rru_A1115 0.41 -1.1
1,310,583 - Rru_A1115 0.41 +0.3
1,310,583 - Rru_A1115 0.41 -0.5
1,310,583 - Rru_A1115 0.41 -0.8
1,310,583 - Rru_A1115 0.41 +0.7
1,310,620 + Rru_A1115 0.45 -0.3
1,310,621 - Rru_A1115 0.45 -3.4
1,310,771 + Rru_A1115 0.61 +0.1
1,310,772 - Rru_A1115 0.61 +1.5
1,310,797 + Rru_A1115 0.64 -0.4
1,310,797 + Rru_A1115 0.64 +0.3
1,310,798 - Rru_A1115 0.64 +1.7
1,310,798 - Rru_A1115 0.64 -0.8
1,310,798 - Rru_A1115 0.64 -0.7
1,310,798 - Rru_A1115 0.64 +0.3
1,310,981 + Rru_A1115 0.84 +0.2
1,310,981 + Rru_A1115 0.84 -2.3
1,310,981 + Rru_A1115 0.84 +0.9
1,310,982 - Rru_A1115 0.84 -0.9
1,311,164 + +0.7
1,311,164 + -0.7
1,311,165 - +0.8
1,311,165 - -3.7
1,311,165 - -1.2
1,311,170 + -0.3
1,311,226 + +0.1
1,311,290 - +0.5
1,311,298 + -4.3
1,311,298 + +0.4
1,311,299 - +0.5
1,311,299 - +0.0
1,311,310 + -0.4
1,311,413 + Rru_A1116 0.24 +1.3
1,311,414 - Rru_A1116 0.25 -1.2
1,311,463 + Rru_A1116 0.33 +0.3
1,311,463 + Rru_A1116 0.33 +3.1
1,311,463 + Rru_A1116 0.33 +0.7
1,311,463 + Rru_A1116 0.33 -0.4
1,311,463 + Rru_A1116 0.33 +0.0
1,311,464 - Rru_A1116 0.34 +1.2
1,311,464 - Rru_A1116 0.34 -0.2
1,311,464 - Rru_A1116 0.34 -3.7
1,311,465 + Rru_A1116 0.34 -0.4
1,311,465 + Rru_A1116 0.34 -0.6
1,311,465 + Rru_A1116 0.34 +0.4
1,311,465 + Rru_A1116 0.34 +1.2
1,311,466 - Rru_A1116 0.34 +0.1
1,311,466 - Rru_A1116 0.34 -2.6
1,311,466 - Rru_A1116 0.34 +1.5
1,311,466 - Rru_A1116 0.34 +1.2
1,311,514 + Rru_A1116 0.43 -0.7
1,311,679 + Rru_A1116 0.72 -0.5
1,311,679 + Rru_A1116 0.72 +0.0
1,311,710 + Rru_A1116 0.78 -4.3
1,311,710 + Rru_A1116 0.78 +0.4
1,311,731 + Rru_A1116 0.82 -3.8
1,311,732 - Rru_A1116 0.82 -1.2
1,311,807 + +0.2
1,311,807 + -0.2
1,311,807 + -0.2
1,311,807 + -0.0
1,311,807 + -1.2
1,311,807 + -2.0
1,311,808 - -0.8
1,311,808 - +0.0
1,311,819 - -0.5
1,311,831 - +1.0
1,311,948 + +0.4
1,311,948 + -0.0
1,311,949 - -0.1
1,311,949 - -0.5
1,311,949 - -2.3
1,311,955 + +1.0
1,311,956 - -2.1
1,312,156 + Rru_A1117 0.13 -2.5
1,312,156 + Rru_A1117 0.13 -4.3
1,312,283 - Rru_A1117 0.24 -0.9
1,312,318 + Rru_A1117 0.27 -1.4
1,312,340 + Rru_A1117 0.29 -0.0
1,312,340 + Rru_A1117 0.29 +0.1
1,312,431 - Rru_A1117 0.38 +0.3
1,312,431 - Rru_A1117 0.38 +1.8
1,312,431 - Rru_A1117 0.38 +0.4
1,312,432 + Rru_A1117 0.38 -0.0
1,312,432 + Rru_A1117 0.38 -0.9
1,312,432 + Rru_A1117 0.38 -1.4
1,312,433 - Rru_A1117 0.38 -4.8
1,312,433 - Rru_A1117 0.38 -1.7
1,312,676 + Rru_A1117 0.60 +0.6
1,312,677 - Rru_A1117 0.60 -0.8
1,312,790 + Rru_A1117 0.70 -4.0
1,312,790 + Rru_A1117 0.70 -0.2
1,312,790 + Rru_A1117 0.70 -2.7
1,312,790 + Rru_A1117 0.70 +0.0
1,312,790 + Rru_A1117 0.70 +0.7
1,312,790 + Rru_A1117 0.70 +0.1
1,312,790 + Rru_A1117 0.70 -2.5
1,312,790 + Rru_A1117 0.70 -0.2
1,312,790 + Rru_A1117 0.70 -0.7
1,312,790 + Rru_A1117 0.70 -2.7
1,312,791 - Rru_A1117 0.70 -0.6
1,312,791 - Rru_A1117 0.70 -3.2
1,312,791 - Rru_A1117 0.70 +0.2
1,312,791 - Rru_A1117 0.70 -0.5
1,312,791 - Rru_A1117 0.70 -0.6
1,312,791 - Rru_A1117 0.70 +0.9
1,312,791 - Rru_A1117 0.70 -2.0
1,312,791 - Rru_A1117 0.70 +1.0
1,312,791 - Rru_A1117 0.70 -1.6

Or see this region's nucleotide sequence