Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0997

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0995 and Rru_A0996 are separated by 96 nucleotidesRru_A0996 and Rru_A0997 are separated by 5 nucleotidesRru_A0997 and Rru_A0998 overlap by 4 nucleotidesRru_A0998 and Rru_A0999 are separated by 3 nucleotides Rru_A0995: Rru_A0995 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 1,184,452 to 1,184,637 _A0995 Rru_A0996: Rru_A0996 - Leucine rich repeat variant (NCBI), at 1,184,734 to 1,185,558 _A0996 Rru_A0997: Rru_A0997 - NifZ (NCBI), at 1,185,564 to 1,185,857 _A0997 Rru_A0998: Rru_A0998 - NifT/FixU (NCBI), at 1,185,854 to 1,186,069 _A0998 Rru_A0999: Rru_A0999 - hypothetical protein (NCBI), at 1,186,073 to 1,186,930 _A0999 Position (kb) 1185 1186Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1184.980 kb on + strand, within Rru_A0996at 1184.981 kb on - strand, within Rru_A0996at 1185.169 kb on + strand, within Rru_A0996at 1185.169 kb on + strand, within Rru_A0996at 1185.170 kb on - strand, within Rru_A0996at 1185.397 kb on + strand, within Rru_A0996at 1185.397 kb on + strand, within Rru_A0996at 1185.450 kb on + strand, within Rru_A0996at 1185.450 kb on + strand, within Rru_A0996at 1185.613 kb on + strand, within Rru_A0997at 1185.613 kb on + strand, within Rru_A0997at 1185.613 kb on + strand, within Rru_A0997at 1185.614 kb on - strand, within Rru_A0997at 1185.614 kb on - strand, within Rru_A0997at 1185.636 kb on + strand, within Rru_A0997at 1185.665 kb on + strand, within Rru_A0997at 1185.665 kb on + strand, within Rru_A0997at 1185.665 kb on + strand, within Rru_A0997at 1185.666 kb on - strand, within Rru_A0997at 1185.666 kb on - strand, within Rru_A0997at 1185.735 kb on + strand, within Rru_A0997at 1185.736 kb on - strand, within Rru_A0997at 1185.736 kb on - strand, within Rru_A0997at 1185.768 kb on + strand, within Rru_A0997at 1185.768 kb on + strand, within Rru_A0997at 1185.768 kb on + strand, within Rru_A0997at 1185.769 kb on - strand, within Rru_A0997at 1185.769 kb on - strand, within Rru_A0997at 1185.771 kb on + strand, within Rru_A0997at 1185.771 kb on + strand, within Rru_A0997at 1185.771 kb on + strand, within Rru_A0997at 1185.772 kb on - strand, within Rru_A0997at 1185.772 kb on - strand, within Rru_A0997at 1185.777 kb on + strand, within Rru_A0997at 1185.777 kb on + strand, within Rru_A0997at 1185.778 kb on - strand, within Rru_A0997at 1185.778 kb on - strand, within Rru_A0997at 1185.778 kb on - strand, within Rru_A0997at 1185.778 kb on - strand, within Rru_A0997at 1185.896 kb on + strand, within Rru_A0998at 1185.897 kb on - strand, within Rru_A0998at 1185.897 kb on - strand, within Rru_A0998at 1185.897 kb on - strand, within Rru_A0998at 1186.287 kb on - strand, within Rru_A0999at 1186.298 kb on + strand, within Rru_A0999at 1186.299 kb on - strand, within Rru_A0999at 1186.299 kb on - strand, within Rru_A0999at 1186.299 kb on - strand, within Rru_A0999at 1186.421 kb on + strand, within Rru_A0999at 1186.421 kb on + strand, within Rru_A0999at 1186.421 kb on + strand, within Rru_A0999at 1186.421 kb on + strand, within Rru_A0999at 1186.422 kb on - strand, within Rru_A0999at 1186.422 kb on - strand, within Rru_A0999at 1186.422 kb on - strand, within Rru_A0999at 1186.422 kb on - strand, within Rru_A0999at 1186.583 kb on + strand, within Rru_A0999at 1186.584 kb on - strand, within Rru_A0999at 1186.584 kb on - strand, within Rru_A0999at 1186.640 kb on + strand, within Rru_A0999at 1186.640 kb on + strand, within Rru_A0999at 1186.641 kb on - strand, within Rru_A0999at 1186.641 kb on - strand, within Rru_A0999at 1186.763 kb on + strand, within Rru_A0999at 1186.763 kb on + strand, within Rru_A0999at 1186.763 kb on + strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.802 kb on + strand, within Rru_A0999

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,184,980 + Rru_A0996 0.30 +2.1
1,184,981 - Rru_A0996 0.30 -1.2
1,185,169 + Rru_A0996 0.53 +0.7
1,185,169 + Rru_A0996 0.53 +0.5
1,185,170 - Rru_A0996 0.53 -0.0
1,185,397 + Rru_A0996 0.80 +1.0
1,185,397 + Rru_A0996 0.80 -0.6
1,185,450 + Rru_A0996 0.87 +0.4
1,185,450 + Rru_A0996 0.87 -0.0
1,185,613 + Rru_A0997 0.17 -2.8
1,185,613 + Rru_A0997 0.17 +0.1
1,185,613 + Rru_A0997 0.17 -0.2
1,185,614 - Rru_A0997 0.17 +0.2
1,185,614 - Rru_A0997 0.17 -0.6
1,185,636 + Rru_A0997 0.24 +0.1
1,185,665 + Rru_A0997 0.34 -0.4
1,185,665 + Rru_A0997 0.34 -1.9
1,185,665 + Rru_A0997 0.34 +0.5
1,185,666 - Rru_A0997 0.35 -0.4
1,185,666 - Rru_A0997 0.35 +0.9
1,185,735 + Rru_A0997 0.58 -0.4
1,185,736 - Rru_A0997 0.59 +0.5
1,185,736 - Rru_A0997 0.59 -0.1
1,185,768 + Rru_A0997 0.69 -0.1
1,185,768 + Rru_A0997 0.69 -0.9
1,185,768 + Rru_A0997 0.69 -4.3
1,185,769 - Rru_A0997 0.70 +0.9
1,185,769 - Rru_A0997 0.70 -3.1
1,185,771 + Rru_A0997 0.70 -1.1
1,185,771 + Rru_A0997 0.70 -0.2
1,185,771 + Rru_A0997 0.70 -2.3
1,185,772 - Rru_A0997 0.71 -3.5
1,185,772 - Rru_A0997 0.71 -3.2
1,185,777 + Rru_A0997 0.72 -0.4
1,185,777 + Rru_A0997 0.72 -1.2
1,185,778 - Rru_A0997 0.73 -0.6
1,185,778 - Rru_A0997 0.73 +0.4
1,185,778 - Rru_A0997 0.73 +1.2
1,185,778 - Rru_A0997 0.73 -2.8
1,185,896 + Rru_A0998 0.19 +0.4
1,185,897 - Rru_A0998 0.20 +0.5
1,185,897 - Rru_A0998 0.20 +0.1
1,185,897 - Rru_A0998 0.20 +0.5
1,186,287 - Rru_A0999 0.25 -0.9
1,186,298 + Rru_A0999 0.26 -0.6
1,186,299 - Rru_A0999 0.26 +0.1
1,186,299 - Rru_A0999 0.26 +2.2
1,186,299 - Rru_A0999 0.26 -1.7
1,186,421 + Rru_A0999 0.41 +0.4
1,186,421 + Rru_A0999 0.41 -2.9
1,186,421 + Rru_A0999 0.41 +0.0
1,186,421 + Rru_A0999 0.41 -1.6
1,186,422 - Rru_A0999 0.41 +0.3
1,186,422 - Rru_A0999 0.41 +0.1
1,186,422 - Rru_A0999 0.41 +0.7
1,186,422 - Rru_A0999 0.41 +1.1
1,186,583 + Rru_A0999 0.59 -1.4
1,186,584 - Rru_A0999 0.60 -1.1
1,186,584 - Rru_A0999 0.60 -0.7
1,186,640 + Rru_A0999 0.66 -1.1
1,186,640 + Rru_A0999 0.66 +0.1
1,186,641 - Rru_A0999 0.66 -1.8
1,186,641 - Rru_A0999 0.66 +0.2
1,186,763 + Rru_A0999 0.80 +0.2
1,186,763 + Rru_A0999 0.80 -0.2
1,186,763 + Rru_A0999 0.80 -3.1
1,186,764 - Rru_A0999 0.81 -3.5
1,186,764 - Rru_A0999 0.81 -0.8
1,186,764 - Rru_A0999 0.81 -2.1
1,186,764 - Rru_A0999 0.81 +3.3
1,186,764 - Rru_A0999 0.81 +0.8
1,186,764 - Rru_A0999 0.81 +2.6
1,186,802 + Rru_A0999 0.85 +0.7

Or see this region's nucleotide sequence