Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0832

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0830 and Rru_A0831 overlap by 4 nucleotidesRru_A0831 and Rru_A0832 are separated by 20 nucleotidesRru_A0832 and Rru_A0833 overlap by 4 nucleotides Rru_A0830: Rru_A0830 - CRISPR-associated protein, CT1133 (NCBI), at 984,363 to 986,186 _A0830 Rru_A0831: Rru_A0831 - CRISPR-associated protein TM1801 (NCBI), at 986,183 to 987,136 _A0831 Rru_A0832: Rru_A0832 - Protein of unknown function DUF83 (NCBI), at 987,157 to 987,843 _A0832 Rru_A0833: Rru_A0833 - Protein of unknown function DUF48 (NCBI), at 987,840 to 988,874 _A0833 Position (kb) 987 988Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 986.269 kb on + strandat 986.269 kb on + strandat 986.342 kb on + strand, within Rru_A0831at 986.342 kb on + strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.381 kb on - strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.769 kb on - strand, within Rru_A0831at 986.969 kb on - strand, within Rru_A0831at 986.969 kb on - strand, within Rru_A0831at 987.239 kb on - strand, within Rru_A0832at 987.401 kb on + strand, within Rru_A0832at 987.478 kb on + strand, within Rru_A0832at 987.478 kb on + strand, within Rru_A0832at 987.479 kb on - strand, within Rru_A0832at 987.589 kb on + strand, within Rru_A0832at 987.589 kb on + strand, within Rru_A0832at 987.589 kb on + strand, within Rru_A0832at 987.590 kb on - strand, within Rru_A0832at 987.864 kb on + strandat 987.865 kb on - strandat 987.956 kb on + strand, within Rru_A0833at 987.956 kb on + strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.990 kb on + strand, within Rru_A0833at 987.990 kb on + strand, within Rru_A0833at 987.991 kb on - strand, within Rru_A0833at 987.991 kb on - strand, within Rru_A0833at 987.991 kb on - strand, within Rru_A0833at 988.122 kb on + strand, within Rru_A0833at 988.122 kb on + strand, within Rru_A0833at 988.123 kb on - strand, within Rru_A0833at 988.283 kb on + strand, within Rru_A0833at 988.359 kb on + strand, within Rru_A0833at 988.360 kb on - strand, within Rru_A0833at 988.468 kb on + strand, within Rru_A0833at 988.468 kb on + strand, within Rru_A0833at 988.469 kb on - strand, within Rru_A0833at 988.469 kb on - strand, within Rru_A0833at 988.470 kb on + strand, within Rru_A0833at 988.470 kb on + strand, within Rru_A0833at 988.471 kb on - strand, within Rru_A0833at 988.471 kb on - strand, within Rru_A0833at 988.473 kb on - strand, within Rru_A0833at 988.720 kb on + strand, within Rru_A0833at 988.720 kb on + strand, within Rru_A0833at 988.720 kb on + strand, within Rru_A0833at 988.721 kb on - strand, within Rru_A0833

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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986,269 + -2.8
986,269 + -1.0
986,342 + Rru_A0831 0.17 +0.9
986,342 + Rru_A0831 0.17 -1.1
986,343 - Rru_A0831 0.17 -0.6
986,343 - Rru_A0831 0.17 +0.4
986,343 - Rru_A0831 0.17 -1.4
986,343 - Rru_A0831 0.17 +1.2
986,343 - Rru_A0831 0.17 -2.2
986,343 - Rru_A0831 0.17 -1.9
986,343 - Rru_A0831 0.17 -0.9
986,343 - Rru_A0831 0.17 -4.1
986,380 + Rru_A0831 0.21 -3.3
986,380 + Rru_A0831 0.21 -1.3
986,380 + Rru_A0831 0.21 -2.4
986,380 + Rru_A0831 0.21 -0.0
986,380 + Rru_A0831 0.21 -0.6
986,381 - Rru_A0831 0.21 +0.4
986,384 + Rru_A0831 0.21 -1.9
986,384 + Rru_A0831 0.21 -0.3
986,384 + Rru_A0831 0.21 -2.2
986,384 + Rru_A0831 0.21 +1.2
986,384 + Rru_A0831 0.21 -4.8
986,384 + Rru_A0831 0.21 +0.1
986,385 - Rru_A0831 0.21 +0.1
986,385 - Rru_A0831 0.21 -0.6
986,385 - Rru_A0831 0.21 -0.5
986,385 - Rru_A0831 0.21 +1.9
986,385 - Rru_A0831 0.21 +0.1
986,385 - Rru_A0831 0.21 +1.0
986,385 - Rru_A0831 0.21 +1.6
986,769 - Rru_A0831 0.61 +0.3
986,969 - Rru_A0831 0.82 +0.4
986,969 - Rru_A0831 0.82 +0.4
987,239 - Rru_A0832 0.12 -3.3
987,401 + Rru_A0832 0.36 -3.7
987,478 + Rru_A0832 0.47 +0.3
987,478 + Rru_A0832 0.47 +0.3
987,479 - Rru_A0832 0.47 +0.4
987,589 + Rru_A0832 0.63 -3.9
987,589 + Rru_A0832 0.63 -2.4
987,589 + Rru_A0832 0.63 +1.3
987,590 - Rru_A0832 0.63 -3.3
987,864 + -1.5
987,865 - -1.7
987,956 + Rru_A0833 0.11 +2.0
987,956 + Rru_A0833 0.11 -4.7
987,957 - Rru_A0833 0.11 -0.0
987,957 - Rru_A0833 0.11 -0.2
987,957 - Rru_A0833 0.11 +0.9
987,957 - Rru_A0833 0.11 +0.2
987,957 - Rru_A0833 0.11 -0.4
987,990 + Rru_A0833 0.14 -1.1
987,990 + Rru_A0833 0.14 -0.1
987,991 - Rru_A0833 0.15 +0.6
987,991 - Rru_A0833 0.15 -4.8
987,991 - Rru_A0833 0.15 +0.1
988,122 + Rru_A0833 0.27 -0.5
988,122 + Rru_A0833 0.27 -4.7
988,123 - Rru_A0833 0.27 -4.3
988,283 + Rru_A0833 0.43 -1.9
988,359 + Rru_A0833 0.50 -3.4
988,360 - Rru_A0833 0.50 -0.2
988,468 + Rru_A0833 0.61 -0.4
988,468 + Rru_A0833 0.61 +1.4
988,469 - Rru_A0833 0.61 -0.3
988,469 - Rru_A0833 0.61 -1.9
988,470 + Rru_A0833 0.61 -2.7
988,470 + Rru_A0833 0.61 -0.6
988,471 - Rru_A0833 0.61 -0.5
988,471 - Rru_A0833 0.61 -1.3
988,473 - Rru_A0833 0.61 +2.1
988,720 + Rru_A0833 0.85 -0.6
988,720 + Rru_A0833 0.85 -0.8
988,720 + Rru_A0833 0.85 -0.2
988,721 - Rru_A0833 0.85 -1.7

Or see this region's nucleotide sequence