Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0783

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0781 and Rru_A0782 are separated by 137 nucleotidesRru_A0782 and Rru_A0783 are separated by 7 nucleotidesRru_A0783 and Rru_A0784 are separated by 198 nucleotides Rru_A0781: Rru_A0781 - Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI), at 933,308 to 934,411 _A0781 Rru_A0782: Rru_A0782 - hypothetical protein (NCBI), at 934,549 to 934,887 _A0782 Rru_A0783: Rru_A0783 - hypothetical protein (NCBI), at 934,895 to 935,452 _A0783 Rru_A0784: Rru_A0784 - O-acetylhomoserine/O-acetylserine sulfhydrylase (NCBI), at 935,651 to 936,979 _A0784 Position (kb) 934 935 936Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.945 kb on - strand, within Rru_A0781at 933.945 kb on - strand, within Rru_A0781at 934.044 kb on - strand, within Rru_A0781at 934.044 kb on - strand, within Rru_A0781at 934.094 kb on + strand, within Rru_A0781at 934.094 kb on + strand, within Rru_A0781at 934.095 kb on - strand, within Rru_A0781at 934.095 kb on - strand, within Rru_A0781at 934.125 kb on - strand, within Rru_A0781at 934.302 kb on - strandat 934.302 kb on - strandat 934.332 kb on + strandat 934.333 kb on - strandat 934.334 kb on + strandat 934.334 kb on + strandat 934.334 kb on + strandat 934.334 kb on + strandat 934.335 kb on - strandat 934.335 kb on - strandat 934.335 kb on - strandat 934.364 kb on + strandat 934.385 kb on + strandat 934.407 kb on - strandat 934.407 kb on - strandat 934.439 kb on + strandat 934.440 kb on - strandat 934.440 kb on - strandat 934.440 kb on - strandat 934.462 kb on - strandat 934.510 kb on + strandat 934.511 kb on - strandat 934.718 kb on - strand, within Rru_A0782at 934.880 kb on - strandat 934.880 kb on - strandat 935.060 kb on + strand, within Rru_A0783at 935.060 kb on + strand, within Rru_A0783at 935.060 kb on + strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.062 kb on + strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.110 kb on - strand, within Rru_A0783at 935.151 kb on + strand, within Rru_A0783at 935.237 kb on + strand, within Rru_A0783at 935.238 kb on - strand, within Rru_A0783at 935.269 kb on + strand, within Rru_A0783at 935.450 kb on + strandat 935.524 kb on + strandat 935.524 kb on + strandat 935.545 kb on + strandat 935.604 kb on - strandat 935.677 kb on + strandat 935.778 kb on - strandat 935.792 kb on + strand, within Rru_A0784at 935.792 kb on + strand, within Rru_A0784at 935.793 kb on - strand, within Rru_A0784at 935.793 kb on - strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.852 kb on - strand, within Rru_A0784at 935.852 kb on - strand, within Rru_A0784at 935.852 kb on - strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 936.140 kb on + strand, within Rru_A0784at 936.140 kb on + strand, within Rru_A0784at 936.141 kb on - strand, within Rru_A0784at 936.141 kb on - strand, within Rru_A0784at 936.143 kb on + strand, within Rru_A0784at 936.238 kb on + strand, within Rru_A0784at 936.239 kb on - strand, within Rru_A0784at 936.239 kb on - strand, within Rru_A0784at 936.297 kb on - strand, within Rru_A0784at 936.312 kb on - strand, within Rru_A0784at 936.422 kb on + strand, within Rru_A0784at 936.422 kb on + strand, within Rru_A0784

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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933,944 + Rru_A0781 0.58 -0.4
933,944 + Rru_A0781 0.58 +0.2
933,944 + Rru_A0781 0.58 +0.3
933,944 + Rru_A0781 0.58 -2.6
933,945 - Rru_A0781 0.58 +0.8
933,945 - Rru_A0781 0.58 +0.4
934,044 - Rru_A0781 0.67 -3.2
934,044 - Rru_A0781 0.67 -2.2
934,094 + Rru_A0781 0.71 +1.2
934,094 + Rru_A0781 0.71 -2.2
934,095 - Rru_A0781 0.71 -0.8
934,095 - Rru_A0781 0.71 -0.8
934,125 - Rru_A0781 0.74 -3.1
934,302 - -0.0
934,302 - +0.4
934,332 + -1.9
934,333 - +0.4
934,334 + +1.2
934,334 + +0.0
934,334 + +0.5
934,334 + +0.5
934,335 - +0.9
934,335 - +0.5
934,335 - -0.0
934,364 + -0.2
934,385 + +0.6
934,407 - -2.6
934,407 - -0.2
934,439 + -2.9
934,440 - -3.2
934,440 - +0.0
934,440 - -2.6
934,462 - -0.2
934,510 + -0.2
934,511 - +1.0
934,718 - Rru_A0782 0.50 -2.7
934,880 - -0.4
934,880 - -2.7
935,060 + Rru_A0783 0.30 +0.4
935,060 + Rru_A0783 0.30 +0.2
935,060 + Rru_A0783 0.30 -1.5
935,061 - Rru_A0783 0.30 -4.7
935,061 - Rru_A0783 0.30 +1.5
935,061 - Rru_A0783 0.30 +0.7
935,062 + Rru_A0783 0.30 +0.4
935,063 - Rru_A0783 0.30 +0.2
935,063 - Rru_A0783 0.30 +0.5
935,063 - Rru_A0783 0.30 -0.8
935,063 - Rru_A0783 0.30 -2.0
935,063 - Rru_A0783 0.30 +1.2
935,110 - Rru_A0783 0.39 +1.4
935,151 + Rru_A0783 0.46 +1.1
935,237 + Rru_A0783 0.61 +0.4
935,238 - Rru_A0783 0.61 +2.2
935,269 + Rru_A0783 0.67 +1.2
935,450 + +1.0
935,524 + +0.1
935,524 + -0.6
935,545 + -1.9
935,604 - +2.6
935,677 + +1.0
935,778 - +0.7
935,792 + Rru_A0784 0.11 -0.3
935,792 + Rru_A0784 0.11 -0.5
935,793 - Rru_A0784 0.11 +0.4
935,793 - Rru_A0784 0.11 +0.6
935,851 + Rru_A0784 0.15 -2.6
935,851 + Rru_A0784 0.15 +0.9
935,851 + Rru_A0784 0.15 -0.5
935,851 + Rru_A0784 0.15 +1.1
935,851 + Rru_A0784 0.15 -2.0
935,851 + Rru_A0784 0.15 -1.1
935,852 - Rru_A0784 0.15 -1.1
935,852 - Rru_A0784 0.15 -1.3
935,852 - Rru_A0784 0.15 -0.4
935,855 + Rru_A0784 0.15 -0.0
935,855 + Rru_A0784 0.15 +0.8
935,855 + Rru_A0784 0.15 -0.4
935,855 + Rru_A0784 0.15 +2.0
935,855 + Rru_A0784 0.15 -0.0
935,856 - Rru_A0784 0.15 -2.3
935,856 - Rru_A0784 0.15 +0.3
935,856 - Rru_A0784 0.15 -1.4
935,856 - Rru_A0784 0.15 -0.6
936,140 + Rru_A0784 0.37 +0.2
936,140 + Rru_A0784 0.37 +1.6
936,141 - Rru_A0784 0.37 +0.6
936,141 - Rru_A0784 0.37 +0.8
936,143 + Rru_A0784 0.37 +0.5
936,238 + Rru_A0784 0.44 +1.2
936,239 - Rru_A0784 0.44 +1.2
936,239 - Rru_A0784 0.44 -1.4
936,297 - Rru_A0784 0.49 +0.9
936,312 - Rru_A0784 0.50 -0.8
936,422 + Rru_A0784 0.58 -0.3
936,422 + Rru_A0784 0.58 +0.7

Or see this region's nucleotide sequence