Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0776

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0775 and Rru_A0776 overlap by 4 nucleotidesRru_A0776 and Rru_A0777 overlap by 4 nucleotides Rru_A0775: Rru_A0775 - 2OG-Fe(II) oxygenase (NCBI), at 926,495 to 927,526 _A0775 Rru_A0776: Rru_A0776 - Aspartate/tyrosine/aromatic aminotransferase (NCBI), at 927,523 to 928,698 _A0776 Rru_A0777: Rru_A0777 - D-lactate dehydrogenase (cytochrome) (NCBI), at 928,695 to 930,143 _A0777 Position (kb) 927 928 929Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 926.621 kb on + strand, within Rru_A0775at 926.622 kb on - strand, within Rru_A0775at 926.622 kb on - strand, within Rru_A0775at 926.750 kb on + strand, within Rru_A0775at 926.750 kb on + strand, within Rru_A0775at 926.752 kb on + strand, within Rru_A0775at 926.753 kb on - strand, within Rru_A0775at 926.753 kb on - strand, within Rru_A0775at 926.753 kb on - strand, within Rru_A0775at 927.018 kb on - strand, within Rru_A0775at 927.018 kb on - strand, within Rru_A0775at 927.251 kb on + strand, within Rru_A0775at 927.251 kb on + strand, within Rru_A0775at 927.251 kb on + strand, within Rru_A0775at 927.895 kb on + strand, within Rru_A0776at 927.896 kb on - strand, within Rru_A0776at 928.126 kb on + strand, within Rru_A0776at 928.471 kb on + strand, within Rru_A0776at 928.472 kb on - strand, within Rru_A0776at 928.472 kb on - strand, within Rru_A0776at 929.526 kb on - strand, within Rru_A0777

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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926,621 + Rru_A0775 0.12 -0.7
926,622 - Rru_A0775 0.12 +2.6
926,622 - Rru_A0775 0.12 -3.4
926,750 + Rru_A0775 0.25 +1.1
926,750 + Rru_A0775 0.25 +0.3
926,752 + Rru_A0775 0.25 -0.6
926,753 - Rru_A0775 0.25 +0.4
926,753 - Rru_A0775 0.25 -0.4
926,753 - Rru_A0775 0.25 -0.4
927,018 - Rru_A0775 0.51 +0.8
927,018 - Rru_A0775 0.51 -4.7
927,251 + Rru_A0775 0.73 -2.0
927,251 + Rru_A0775 0.73 -4.2
927,251 + Rru_A0775 0.73 -0.2
927,895 + Rru_A0776 0.32 -2.9
927,896 - Rru_A0776 0.32 -2.2
928,126 + Rru_A0776 0.51 -4.2
928,471 + Rru_A0776 0.81 -3.1
928,472 - Rru_A0776 0.81 -0.1
928,472 - Rru_A0776 0.81 +0.0
929,526 - Rru_A0777 0.57 -0.4

Or see this region's nucleotide sequence