Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0758

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0756 and Rru_A0757 are separated by 164 nucleotidesRru_A0757 and Rru_A0758 overlap by 4 nucleotidesRru_A0758 and Rru_A0759 are separated by 331 nucleotides Rru_A0756: Rru_A0756 - hypothetical protein (NCBI), at 888,280 to 889,590 _A0756 Rru_A0757: Rru_A0757 - Isochorismatase hydrolase (NCBI), at 889,755 to 890,321 _A0757 Rru_A0758: Rru_A0758 - Transcriptional Regulator, AraC family (NCBI), at 890,318 to 891,334 _A0758 Rru_A0759: Rru_A0759 - Aldo/keto reductase (NCBI), at 891,666 to 892,574 _A0759 Position (kb) 890 891 892Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 889.539 kb on + strandat 889.540 kb on - strandat 889.540 kb on - strandat 889.584 kb on + strandat 889.584 kb on + strandat 889.585 kb on - strandat 890.357 kb on + strandat 890.358 kb on - strandat 890.358 kb on - strandat 890.358 kb on - strandat 890.358 kb on - strandat 890.358 kb on - strandat 890.358 kb on - strandat 890.446 kb on - strand, within Rru_A0758at 890.462 kb on + strand, within Rru_A0758at 890.462 kb on + strand, within Rru_A0758at 890.462 kb on + strand, within Rru_A0758at 890.462 kb on + strand, within Rru_A0758at 890.462 kb on + strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.463 kb on - strand, within Rru_A0758at 890.683 kb on - strand, within Rru_A0758at 890.816 kb on + strand, within Rru_A0758at 890.817 kb on - strand, within Rru_A0758at 890.817 kb on - strand, within Rru_A0758at 890.817 kb on - strand, within Rru_A0758at 890.817 kb on - strand, within Rru_A0758at 890.817 kb on - strand, within Rru_A0758at 890.930 kb on + strand, within Rru_A0758at 890.942 kb on + strand, within Rru_A0758at 890.942 kb on + strand, within Rru_A0758at 890.942 kb on + strand, within Rru_A0758at 890.942 kb on + strand, within Rru_A0758at 890.943 kb on - strand, within Rru_A0758at 890.943 kb on - strand, within Rru_A0758at 891.152 kb on + strand, within Rru_A0758at 891.152 kb on + strand, within Rru_A0758at 891.153 kb on - strand, within Rru_A0758at 891.211 kb on + strand, within Rru_A0758at 891.316 kb on + strandat 891.316 kb on + strandat 891.317 kb on - strandat 891.413 kb on + strandat 891.413 kb on + strandat 891.413 kb on + strandat 891.434 kb on - strandat 891.434 kb on - strandat 891.495 kb on - strandat 891.508 kb on - strandat 891.541 kb on - strandat 891.607 kb on + strandat 891.607 kb on + strandat 891.607 kb on + strandat 891.608 kb on - strandat 891.608 kb on - strandat 891.608 kb on - strandat 891.833 kb on + strand, within Rru_A0759at 891.834 kb on - strand, within Rru_A0759at 891.846 kb on + strand, within Rru_A0759at 891.846 kb on + strand, within Rru_A0759at 891.847 kb on - strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.030 kb on - strand, within Rru_A0759at 892.030 kb on - strand, within Rru_A0759at 892.030 kb on - strand, within Rru_A0759at 892.030 kb on - strand, within Rru_A0759at 892.196 kb on - strand, within Rru_A0759at 892.212 kb on - strand, within Rru_A0759at 892.214 kb on + strand, within Rru_A0759at 892.237 kb on + strand, within Rru_A0759at 892.311 kb on + strand, within Rru_A0759at 892.312 kb on - strand, within Rru_A0759

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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889,539 + +0.1
889,540 - +0.3
889,540 - +1.2
889,584 + +1.2
889,584 + +0.0
889,585 - +0.5
890,357 + -0.5
890,358 - +1.3
890,358 - -2.0
890,358 - -1.4
890,358 - +1.4
890,358 - -1.2
890,358 - -2.0
890,446 - Rru_A0758 0.13 +1.3
890,462 + Rru_A0758 0.14 +0.7
890,462 + Rru_A0758 0.14 +0.2
890,462 + Rru_A0758 0.14 -0.0
890,462 + Rru_A0758 0.14 -0.4
890,462 + Rru_A0758 0.14 -0.3
890,463 - Rru_A0758 0.14 -3.6
890,463 - Rru_A0758 0.14 +0.3
890,463 - Rru_A0758 0.14 +0.2
890,463 - Rru_A0758 0.14 -1.2
890,463 - Rru_A0758 0.14 -2.2
890,463 - Rru_A0758 0.14 -0.5
890,683 - Rru_A0758 0.36 -1.0
890,816 + Rru_A0758 0.49 -2.2
890,817 - Rru_A0758 0.49 -1.8
890,817 - Rru_A0758 0.49 -1.4
890,817 - Rru_A0758 0.49 -0.2
890,817 - Rru_A0758 0.49 -0.9
890,817 - Rru_A0758 0.49 +0.7
890,930 + Rru_A0758 0.60 +0.3
890,942 + Rru_A0758 0.61 -2.3
890,942 + Rru_A0758 0.61 -0.9
890,942 + Rru_A0758 0.61 -0.8
890,942 + Rru_A0758 0.61 +0.9
890,943 - Rru_A0758 0.61 +0.1
890,943 - Rru_A0758 0.61 -0.1
891,152 + Rru_A0758 0.82 -1.9
891,152 + Rru_A0758 0.82 +0.1
891,153 - Rru_A0758 0.82 +0.6
891,211 + Rru_A0758 0.88 +0.3
891,316 + +2.0
891,316 + -4.8
891,317 - +1.1
891,413 + -0.1
891,413 + -1.1
891,413 + -1.0
891,434 - +1.0
891,434 - -2.0
891,495 - -1.1
891,508 - +0.9
891,541 - +0.4
891,607 + +0.8
891,607 + -1.1
891,607 + +0.8
891,608 - +0.1
891,608 - -1.2
891,608 - +1.1
891,833 + Rru_A0759 0.18 -0.6
891,834 - Rru_A0759 0.18 +0.9
891,846 + Rru_A0759 0.20 -3.5
891,846 + Rru_A0759 0.20 -0.1
891,847 - Rru_A0759 0.20 +1.1
892,029 + Rru_A0759 0.40 +2.3
892,029 + Rru_A0759 0.40 -0.4
892,029 + Rru_A0759 0.40 -1.1
892,029 + Rru_A0759 0.40 +1.4
892,029 + Rru_A0759 0.40 -0.4
892,029 + Rru_A0759 0.40 -0.3
892,030 - Rru_A0759 0.40 +1.0
892,030 - Rru_A0759 0.40 -0.7
892,030 - Rru_A0759 0.40 +0.7
892,030 - Rru_A0759 0.40 +1.2
892,196 - Rru_A0759 0.58 +0.5
892,212 - Rru_A0759 0.60 -2.6
892,214 + Rru_A0759 0.60 +1.4
892,237 + Rru_A0759 0.63 -0.1
892,311 + Rru_A0759 0.71 -0.9
892,312 - Rru_A0759 0.71 +3.6

Or see this region's nucleotide sequence