Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0754 and Rru_A0755 are separated by 63 nucleotides Rru_A0755 and Rru_A0756 are separated by 24 nucleotides
Rru_A0754: Rru_A0754 - hypothetical protein (NCBI), at 885,418 to 886,488
_A0754
Rru_A0755: Rru_A0755 - chemotaxis sensory transducer (NCBI), at 886,552 to 888,255
_A0755
Rru_A0756: Rru_A0756 - hypothetical protein (NCBI), at 888,280 to 889,590
_A0756
Position (kb) 886
887
888
889 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 885.598 kb on + strand, within Rru_A0754 at 885.598 kb on + strand, within Rru_A0754 at 885.598 kb on + strand, within Rru_A0754 at 885.670 kb on - strand, within Rru_A0754 at 885.670 kb on - strand, within Rru_A0754 at 885.670 kb on - strand, within Rru_A0754 at 886.015 kb on + strand, within Rru_A0754 at 886.015 kb on + strand, within Rru_A0754 at 886.016 kb on - strand, within Rru_A0754 at 886.016 kb on - strand, within Rru_A0754 at 886.016 kb on - strand, within Rru_A0754 at 886.093 kb on - strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.201 kb on + strand, within Rru_A0754 at 886.420 kb on + strand at 886.420 kb on + strand at 886.421 kb on - strand at 886.421 kb on - strand at 886.562 kb on + strand at 886.563 kb on - strand at 886.671 kb on + strand at 886.671 kb on + strand at 886.698 kb on + strand at 886.699 kb on - strand at 886.715 kb on - strand at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.661 kb on + strand, within Rru_A0755 at 887.662 kb on - strand, within Rru_A0755 at 887.662 kb on - strand, within Rru_A0755 at 887.874 kb on + strand, within Rru_A0755 at 888.198 kb on + strand at 888.199 kb on - strand at 888.505 kb on + strand, within Rru_A0756 at 888.505 kb on + strand, within Rru_A0756 at 889.021 kb on + strand, within Rru_A0756 at 889.201 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.225 kb on + strand, within Rru_A0756 at 889.226 kb on - strand, within Rru_A0756 at 889.226 kb on - strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.235 kb on + strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756 at 889.236 kb on - strand, within Rru_A0756
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 885,598 + Rru_A0754 0.17 +0.6 885,598 + Rru_A0754 0.17 -1.4 885,598 + Rru_A0754 0.17 +0.4 885,670 - Rru_A0754 0.24 -2.4 885,670 - Rru_A0754 0.24 -0.2 885,670 - Rru_A0754 0.24 -0.0 886,015 + Rru_A0754 0.56 -0.4 886,015 + Rru_A0754 0.56 +0.2 886,016 - Rru_A0754 0.56 +0.5 886,016 - Rru_A0754 0.56 -0.5 886,016 - Rru_A0754 0.56 -2.4 886,093 - Rru_A0754 0.63 +1.5 886,201 + Rru_A0754 0.73 -0.3 886,201 + Rru_A0754 0.73 -2.8 886,201 + Rru_A0754 0.73 +1.0 886,201 + Rru_A0754 0.73 -3.3 886,420 + -3.9 886,420 + -0.7 886,421 - -0.4 886,421 - -2.0 886,562 + +0.6 886,563 - -0.0 886,671 + +2.0 886,671 + -1.1 886,698 + -3.4 886,699 - -0.1 886,715 - +0.5 887,661 + Rru_A0755 0.65 +0.8 887,661 + Rru_A0755 0.65 -2.2 887,661 + Rru_A0755 0.65 -3.0 887,661 + Rru_A0755 0.65 +2.4 887,661 + Rru_A0755 0.65 +1.5 887,662 - Rru_A0755 0.65 -0.6 887,662 - Rru_A0755 0.65 -0.2 887,874 + Rru_A0755 0.78 +3.0 888,198 + -0.7 888,199 - -0.1 888,505 + Rru_A0756 0.17 +0.8 888,505 + Rru_A0756 0.17 -0.8 889,021 + Rru_A0756 0.57 -0.1 889,201 + Rru_A0756 0.70 -2.6 889,225 + Rru_A0756 0.72 -3.1 889,225 + Rru_A0756 0.72 -0.8 889,225 + Rru_A0756 0.72 -1.5 889,225 + Rru_A0756 0.72 +1.2 889,226 - Rru_A0756 0.72 -2.3 889,226 - Rru_A0756 0.72 -3.0 889,235 + Rru_A0756 0.73 +0.7 889,235 + Rru_A0756 0.73 -2.0 889,235 + Rru_A0756 0.73 +2.0 889,235 + Rru_A0756 0.73 +0.4 889,235 + Rru_A0756 0.73 -0.1 889,235 + Rru_A0756 0.73 -0.3 889,236 - Rru_A0756 0.73 -1.9 889,236 - Rru_A0756 0.73 -1.0 889,236 - Rru_A0756 0.73 -0.1 889,236 - Rru_A0756 0.73 -0.2
Or see this region's nucleotide sequence