Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0748

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0747 and Rru_A0748 are separated by 126 nucleotidesRru_A0748 and Rru_A0749 are separated by 20 nucleotides Rru_A0747: Rru_A0747 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (NCBI), at 875,140 to 876,294 _A0747 Rru_A0748: Rru_A0748 - Histidyl-tRNA synthetase, class IIa (NCBI), at 876,421 to 877,668 _A0748 Rru_A0749: Rru_A0749 - Glutamyl-tRNA reductase (NCBI), at 877,689 to 879,014 _A0749 Position (kb) 876 877 878Strain fitness (log2 ratio) -2 -1 0 1 2at 876.292 kb on + strandat 876.293 kb on - strandat 876.293 kb on - strandat 876.405 kb on + strandat 876.406 kb on - strandat 876.406 kb on - strandat 877.666 kb on + strandat 877.666 kb on + strandat 877.666 kb on + strandat 877.667 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
876,292 + -0.6
876,293 - +1.9
876,293 - -0.1
876,405 + +0.1
876,406 - +2.7
876,406 - -1.9
877,666 + -0.9
877,666 + +0.7
877,666 + +1.1
877,667 - -1.4

Or see this region's nucleotide sequence