Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0683

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0682 and Rru_A0683 are separated by 212 nucleotidesRru_A0683 and Rru_A0684 are separated by 18 nucleotides Rru_A0682: Rru_A0682 - Glutathione reductase (NCBI), at 804,843 to 806,222 _A0682 Rru_A0683: Rru_A0683 - 3-deoxy-7-phosphoheptulonate synthase (NCBI), at 806,435 to 807,820 _A0683 Rru_A0684: Rru_A0684 - hypothetical protein (NCBI), at 807,839 to 809,071 _A0684 Position (kb) 806 807 808Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 805.618 kb on - strand, within Rru_A0682at 805.846 kb on - strand, within Rru_A0682at 806.220 kb on + strandat 806.220 kb on + strandat 806.325 kb on + strandat 806.325 kb on + strandat 806.327 kb on + strandat 806.327 kb on + strandat 806.415 kb on + strandat 806.415 kb on + strandat 806.415 kb on + strandat 806.415 kb on + strandat 807.158 kb on + strand, within Rru_A0683at 807.158 kb on + strand, within Rru_A0683

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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805,618 - Rru_A0682 0.56 -2.5
805,846 - Rru_A0682 0.73 +0.6
806,220 + -0.3
806,220 + -0.2
806,325 + -0.9
806,325 + -3.4
806,327 + -0.3
806,327 + +0.8
806,415 + +0.1
806,415 + -0.1
806,415 + +0.0
806,415 + +0.9
807,158 + Rru_A0683 0.52 -2.4
807,158 + Rru_A0683 0.52 +3.6

Or see this region's nucleotide sequence