Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0661 and Rru_A0662 are separated by 14 nucleotides Rru_A0662 and Rru_A0663 are separated by 405 nucleotides Rru_A0663 and Rru_A0664 are separated by 232 nucleotides
Rru_A0661: Rru_A0661 - Hly-III related proteins (NCBI), at 785,418 to 786,056
_A0661
Rru_A0662: Rru_A0662 - Translation initiation factor IF-1 (NCBI), at 786,071 to 786,358
_A0662
Rru_A0663: Rru_A0663 - Cold-shock DNA-binding domain protein (NCBI), at 786,764 to 786,970
_A0663
Rru_A0664: Rru_A0664 - Signal Transduction Histidine Kinase (NCBI), at 787,203 to 788,237
_A0664
Position (kb) 786
787 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 785.776 kb on + strand, within Rru_A0661 at 785.776 kb on + strand, within Rru_A0661 at 785.829 kb on - strand, within Rru_A0661 at 785.858 kb on + strand, within Rru_A0661 at 785.859 kb on - strand, within Rru_A0661 at 785.861 kb on - strand, within Rru_A0661 at 786.030 kb on - strand at 786.436 kb on - strand at 786.582 kb on + strand at 786.582 kb on + strand at 786.583 kb on - strand at 786.583 kb on - strand at 786.766 kb on - strand at 786.782 kb on - strand at 786.880 kb on + strand, within Rru_A0663 at 786.965 kb on - strand at 786.971 kb on + strand at 786.999 kb on + strand at 786.999 kb on + strand at 787.097 kb on + strand at 787.115 kb on + strand at 787.116 kb on - strand at 787.116 kb on - strand at 787.116 kb on - strand at 787.120 kb on - strand at 787.144 kb on + strand at 787.252 kb on + strand at 787.435 kb on + strand, within Rru_A0664 at 787.435 kb on + strand, within Rru_A0664 at 787.436 kb on - strand, within Rru_A0664 at 787.436 kb on - strand, within Rru_A0664 at 787.436 kb on - strand, within Rru_A0664 at 787.436 kb on - strand, within Rru_A0664 at 787.436 kb on - strand, within Rru_A0664 at 787.439 kb on + strand, within Rru_A0664 at 787.439 kb on + strand, within Rru_A0664 at 787.440 kb on - strand, within Rru_A0664 at 787.630 kb on + strand, within Rru_A0664 at 787.630 kb on + strand, within Rru_A0664 at 787.630 kb on + strand, within Rru_A0664 at 787.630 kb on + strand, within Rru_A0664 at 787.630 kb on + strand, within Rru_A0664 at 787.631 kb on - strand, within Rru_A0664 at 787.631 kb on - strand, within Rru_A0664 at 787.631 kb on - strand, within Rru_A0664 at 787.631 kb on - strand, within Rru_A0664 at 787.631 kb on - strand, within Rru_A0664 at 787.757 kb on + strand, within Rru_A0664 at 787.757 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 785,776 + Rru_A0661 0.56 -0.5 785,776 + Rru_A0661 0.56 +0.3 785,829 - Rru_A0661 0.64 -2.2 785,858 + Rru_A0661 0.69 -1.3 785,859 - Rru_A0661 0.69 +0.4 785,861 - Rru_A0661 0.69 -2.1 786,030 - +1.2 786,436 - +0.7 786,582 + -1.5 786,582 + +2.1 786,583 - +1.6 786,583 - -0.3 786,766 - -2.3 786,782 - +0.1 786,880 + Rru_A0663 0.56 -1.9 786,965 - -0.2 786,971 + -1.1 786,999 + -4.3 786,999 + -0.4 787,097 + +0.9 787,115 + -0.1 787,116 - +1.6 787,116 - +1.0 787,116 - -0.7 787,120 - +0.2 787,144 + +1.7 787,252 + +0.9 787,435 + Rru_A0664 0.22 +0.9 787,435 + Rru_A0664 0.22 -0.4 787,436 - Rru_A0664 0.23 -1.7 787,436 - Rru_A0664 0.23 +0.9 787,436 - Rru_A0664 0.23 -0.8 787,436 - Rru_A0664 0.23 -1.1 787,436 - Rru_A0664 0.23 -0.7 787,439 + Rru_A0664 0.23 +0.0 787,439 + Rru_A0664 0.23 +0.7 787,440 - Rru_A0664 0.23 +0.8 787,630 + Rru_A0664 0.41 -1.6 787,630 + Rru_A0664 0.41 +1.7 787,630 + Rru_A0664 0.41 -2.7 787,630 + Rru_A0664 0.41 -3.1 787,630 + Rru_A0664 0.41 -1.4 787,631 - Rru_A0664 0.41 -1.5 787,631 - Rru_A0664 0.41 -0.5 787,631 - Rru_A0664 0.41 +1.7 787,631 - Rru_A0664 0.41 -2.6 787,631 - Rru_A0664 0.41 -0.4 787,757 + Rru_A0664 0.54 -0.4 787,757 + Rru_A0664 0.54 +0.8 787,930 + Rru_A0664 0.70 +0.4 787,930 + Rru_A0664 0.70 +0.2 787,930 + Rru_A0664 0.70 +0.8 787,930 + Rru_A0664 0.70 +0.1 787,930 + Rru_A0664 0.70 +0.6 787,931 - Rru_A0664 0.70 -1.5 787,931 - Rru_A0664 0.70 -5.3 787,931 - Rru_A0664 0.70 -0.7 787,931 - Rru_A0664 0.70 -0.9
Or see this region's nucleotide sequence