Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0536 and Rru_A0537 are separated by 130 nucleotides Rru_A0537 and Rru_A0538 are separated by 4 nucleotides Rru_A0538 and Rru_A0539 are separated by 156 nucleotides
Rru_A0536: Rru_A0536 - Transcriptional Regulator, AraC family (NCBI), at 631,118 to 632,032
_A0536
Rru_A0537: Rru_A0537 - Protein of unknown function DUF955 (NCBI), at 632,163 to 633,422
_A0537
Rru_A0538: Rru_A0538 - hypothetical protein (NCBI), at 633,427 to 633,912
_A0538
Rru_A0539: Rru_A0539 - Flagellar biosynthesis protein FlhA (NCBI), at 634,069 to 636,231
_A0539
Position (kb) 632
633
634 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 631.219 kb on - strand, within Rru_A0536 at 631.270 kb on + strand, within Rru_A0536 at 631.271 kb on - strand, within Rru_A0536 at 631.271 kb on - strand, within Rru_A0536 at 631.283 kb on + strand, within Rru_A0536 at 631.283 kb on + strand, within Rru_A0536 at 631.283 kb on + strand, within Rru_A0536 at 631.284 kb on - strand, within Rru_A0536 at 631.284 kb on - strand, within Rru_A0536 at 631.284 kb on - strand, within Rru_A0536 at 631.284 kb on - strand, within Rru_A0536 at 631.430 kb on + strand, within Rru_A0536 at 631.430 kb on + strand, within Rru_A0536 at 631.430 kb on + strand, within Rru_A0536 at 631.431 kb on - strand, within Rru_A0536 at 631.432 kb on + strand, within Rru_A0536 at 631.628 kb on + strand, within Rru_A0536 at 631.628 kb on + strand, within Rru_A0536 at 631.628 kb on + strand, within Rru_A0536 at 631.629 kb on - strand, within Rru_A0536 at 631.629 kb on - strand, within Rru_A0536 at 631.630 kb on + strand, within Rru_A0536 at 631.630 kb on + strand, within Rru_A0536 at 631.631 kb on - strand, within Rru_A0536 at 631.631 kb on - strand, within Rru_A0536 at 631.838 kb on + strand, within Rru_A0536 at 631.838 kb on + strand, within Rru_A0536 at 631.839 kb on - strand, within Rru_A0536 at 631.839 kb on - strand, within Rru_A0536 at 631.839 kb on - strand, within Rru_A0536 at 631.839 kb on - strand, within Rru_A0536 at 631.839 kb on - strand, within Rru_A0536 at 631.839 kb on - strand, within Rru_A0536 at 631.839 kb on - strand, within Rru_A0536 at 631.839 kb on - strand, within Rru_A0536 at 632.116 kb on - strand at 632.130 kb on - strand at 632.383 kb on - strand, within Rru_A0537 at 632.383 kb on - strand, within Rru_A0537 at 632.626 kb on - strand, within Rru_A0537 at 632.626 kb on - strand, within Rru_A0537 at 632.856 kb on - strand, within Rru_A0537 at 632.856 kb on - strand, within Rru_A0537 at 633.111 kb on - strand, within Rru_A0537 at 633.235 kb on - strand, within Rru_A0537 at 633.475 kb on + strand at 633.476 kb on - strand, within Rru_A0538 at 633.688 kb on + strand, within Rru_A0538 at 633.689 kb on - strand, within Rru_A0538 at 633.708 kb on + strand, within Rru_A0538 at 633.709 kb on - strand, within Rru_A0538 at 633.865 kb on - strand at 633.968 kb on + strand at 633.969 kb on - strand at 634.013 kb on - strand at 634.169 kb on + strand at 634.169 kb on + strand at 634.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 631,219 - Rru_A0536 0.11 -0.5 631,270 + Rru_A0536 0.17 -0.0 631,271 - Rru_A0536 0.17 -1.3 631,271 - Rru_A0536 0.17 -0.2 631,283 + Rru_A0536 0.18 -2.0 631,283 + Rru_A0536 0.18 -2.0 631,283 + Rru_A0536 0.18 +0.9 631,284 - Rru_A0536 0.18 +1.1 631,284 - Rru_A0536 0.18 -2.6 631,284 - Rru_A0536 0.18 -2.2 631,284 - Rru_A0536 0.18 -3.1 631,430 + Rru_A0536 0.34 +0.3 631,430 + Rru_A0536 0.34 -0.3 631,430 + Rru_A0536 0.34 -3.4 631,431 - Rru_A0536 0.34 +0.7 631,432 + Rru_A0536 0.34 +1.2 631,628 + Rru_A0536 0.56 +0.8 631,628 + Rru_A0536 0.56 -2.2 631,628 + Rru_A0536 0.56 +0.0 631,629 - Rru_A0536 0.56 -2.5 631,629 - Rru_A0536 0.56 -1.8 631,630 + Rru_A0536 0.56 +0.6 631,630 + Rru_A0536 0.56 +1.4 631,631 - Rru_A0536 0.56 -0.9 631,631 - Rru_A0536 0.56 -0.5 631,838 + Rru_A0536 0.79 -2.4 631,838 + Rru_A0536 0.79 -0.5 631,839 - Rru_A0536 0.79 -3.4 631,839 - Rru_A0536 0.79 -0.1 631,839 - Rru_A0536 0.79 +0.4 631,839 - Rru_A0536 0.79 +0.7 631,839 - Rru_A0536 0.79 -1.8 631,839 - Rru_A0536 0.79 +0.7 631,839 - Rru_A0536 0.79 +0.2 631,839 - Rru_A0536 0.79 -1.8 632,116 - -2.2 632,130 - -4.5 632,383 - Rru_A0537 0.17 +0.9 632,383 - Rru_A0537 0.17 -2.0 632,626 - Rru_A0537 0.37 -2.5 632,626 - Rru_A0537 0.37 -0.7 632,856 - Rru_A0537 0.55 -1.5 632,856 - Rru_A0537 0.55 -1.1 633,111 - Rru_A0537 0.75 -1.0 633,235 - Rru_A0537 0.85 -2.1 633,475 + -2.0 633,476 - Rru_A0538 0.10 -1.9 633,688 + Rru_A0538 0.54 -1.4 633,689 - Rru_A0538 0.54 -0.3 633,708 + Rru_A0538 0.58 +0.4 633,709 - Rru_A0538 0.58 -2.7 633,865 - -0.4 633,968 + +3.1 633,969 - -2.6 634,013 - -1.1 634,169 + -0.1 634,169 + +0.2 634,170 - -1.2
Or see this region's nucleotide sequence