Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0534

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0533 and Rru_A0534 are separated by 219 nucleotidesRru_A0534 and Rru_A0535 are separated by 109 nucleotides Rru_A0533: Rru_A0533 - GTP-binding signal recognition particle SRP54, G-domain (NCBI), at 628,105 to 629,211 _A0533 Rru_A0534: Rru_A0534 - hypothetical protein (NCBI), at 629,431 to 629,958 _A0534 Rru_A0535: Rru_A0535 - Protein of unknown function DUF6, transmembrane (NCBI), at 630,068 to 630,982 _A0535 Position (kb) 629 630Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 628.455 kb on + strand, within Rru_A0533at 628.455 kb on + strand, within Rru_A0533at 628.455 kb on + strand, within Rru_A0533at 628.455 kb on + strand, within Rru_A0533at 628.455 kb on + strand, within Rru_A0533at 628.456 kb on - strand, within Rru_A0533at 628.456 kb on - strand, within Rru_A0533at 628.456 kb on - strand, within Rru_A0533at 628.469 kb on + strand, within Rru_A0533at 628.469 kb on + strand, within Rru_A0533at 628.470 kb on - strand, within Rru_A0533at 628.470 kb on - strand, within Rru_A0533at 628.470 kb on - strand, within Rru_A0533at 628.542 kb on + strand, within Rru_A0533at 628.542 kb on + strand, within Rru_A0533at 628.542 kb on + strand, within Rru_A0533at 628.543 kb on - strand, within Rru_A0533at 628.587 kb on + strand, within Rru_A0533at 628.588 kb on - strand, within Rru_A0533at 628.828 kb on + strand, within Rru_A0533at 628.829 kb on - strand, within Rru_A0533at 628.829 kb on - strand, within Rru_A0533at 629.114 kb on + strandat 629.114 kb on + strandat 629.114 kb on + strandat 629.114 kb on + strandat 629.115 kb on - strandat 629.115 kb on - strandat 629.115 kb on - strandat 629.115 kb on - strandat 629.122 kb on - strandat 629.225 kb on + strandat 629.226 kb on - strandat 629.242 kb on - strandat 629.308 kb on + strandat 629.309 kb on - strandat 629.309 kb on - strandat 629.309 kb on - strandat 629.316 kb on + strandat 629.316 kb on + strandat 629.317 kb on - strandat 629.361 kb on - strandat 629.416 kb on + strandat 629.416 kb on + strandat 629.417 kb on - strandat 629.417 kb on - strandat 629.417 kb on - strandat 629.522 kb on + strand, within Rru_A0534at 629.522 kb on + strand, within Rru_A0534at 629.522 kb on + strand, within Rru_A0534at 629.523 kb on - strand, within Rru_A0534at 629.590 kb on - strand, within Rru_A0534at 629.598 kb on - strand, within Rru_A0534at 629.963 kb on - strandat 629.976 kb on - strandat 630.015 kb on + strandat 630.043 kb on + strandat 630.043 kb on + strandat 630.069 kb on + strandat 630.069 kb on + strandat 630.070 kb on - strandat 630.172 kb on - strand, within Rru_A0535at 630.172 kb on - strand, within Rru_A0535at 630.182 kb on + strand, within Rru_A0535at 630.191 kb on + strand, within Rru_A0535at 630.191 kb on + strand, within Rru_A0535at 630.270 kb on + strand, within Rru_A0535at 630.270 kb on + strand, within Rru_A0535at 630.271 kb on - strand, within Rru_A0535at 630.271 kb on - strand, within Rru_A0535at 630.271 kb on - strand, within Rru_A0535at 630.309 kb on + strand, within Rru_A0535at 630.309 kb on + strand, within Rru_A0535at 630.310 kb on - strand, within Rru_A0535at 630.327 kb on + strand, within Rru_A0535at 630.328 kb on - strand, within Rru_A0535at 630.328 kb on - strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.487 kb on - strand, within Rru_A0535at 630.487 kb on - strand, within Rru_A0535at 630.705 kb on + strand, within Rru_A0535at 630.705 kb on + strand, within Rru_A0535at 630.705 kb on + strand, within Rru_A0535at 630.706 kb on - strand, within Rru_A0535at 630.706 kb on - strand, within Rru_A0535at 630.706 kb on - strand, within Rru_A0535at 630.720 kb on + strand, within Rru_A0535at 630.720 kb on + strand, within Rru_A0535at 630.720 kb on + strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.947 kb on + strandat 630.947 kb on + strandat 630.948 kb on - strandat 630.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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628,455 + Rru_A0533 0.32 -0.0
628,455 + Rru_A0533 0.32 -1.6
628,455 + Rru_A0533 0.32 +0.6
628,455 + Rru_A0533 0.32 -2.6
628,455 + Rru_A0533 0.32 +0.4
628,456 - Rru_A0533 0.32 -1.9
628,456 - Rru_A0533 0.32 -4.5
628,456 - Rru_A0533 0.32 +1.7
628,469 + Rru_A0533 0.33 -2.6
628,469 + Rru_A0533 0.33 -0.3
628,470 - Rru_A0533 0.33 +1.4
628,470 - Rru_A0533 0.33 +0.5
628,470 - Rru_A0533 0.33 -2.5
628,542 + Rru_A0533 0.39 +0.9
628,542 + Rru_A0533 0.39 -0.5
628,542 + Rru_A0533 0.39 -0.8
628,543 - Rru_A0533 0.40 -0.2
628,587 + Rru_A0533 0.44 +0.8
628,588 - Rru_A0533 0.44 -0.6
628,828 + Rru_A0533 0.65 +0.1
628,829 - Rru_A0533 0.65 +1.3
628,829 - Rru_A0533 0.65 -0.2
629,114 + +1.7
629,114 + +0.5
629,114 + -0.9
629,114 + +0.6
629,115 - -1.9
629,115 - -1.4
629,115 - -0.2
629,115 - +0.3
629,122 - -1.3
629,225 + +0.8
629,226 - -0.6
629,242 - +1.2
629,308 + -0.1
629,309 - +1.3
629,309 - -1.4
629,309 - -2.5
629,316 + -1.8
629,316 + +1.9
629,317 - +0.8
629,361 - +0.9
629,416 + +0.3
629,416 + +1.0
629,417 - -0.8
629,417 - -3.3
629,417 - +0.1
629,522 + Rru_A0534 0.17 +1.2
629,522 + Rru_A0534 0.17 +0.4
629,522 + Rru_A0534 0.17 -3.3
629,523 - Rru_A0534 0.17 -0.1
629,590 - Rru_A0534 0.30 -1.8
629,598 - Rru_A0534 0.32 -1.1
629,963 - +1.2
629,976 - +0.6
630,015 + -2.4
630,043 + -2.9
630,043 + -0.2
630,069 + -3.7
630,069 + -3.6
630,070 - +0.4
630,172 - Rru_A0535 0.11 +1.8
630,172 - Rru_A0535 0.11 +0.5
630,182 + Rru_A0535 0.12 -1.6
630,191 + Rru_A0535 0.13 +0.6
630,191 + Rru_A0535 0.13 +0.8
630,270 + Rru_A0535 0.22 +0.9
630,270 + Rru_A0535 0.22 +1.7
630,271 - Rru_A0535 0.22 -0.1
630,271 - Rru_A0535 0.22 -0.5
630,271 - Rru_A0535 0.22 -3.1
630,309 + Rru_A0535 0.26 -1.4
630,309 + Rru_A0535 0.26 +0.5
630,310 - Rru_A0535 0.26 -0.3
630,327 + Rru_A0535 0.28 +0.5
630,328 - Rru_A0535 0.28 +0.8
630,328 - Rru_A0535 0.28 +0.3
630,486 + Rru_A0535 0.46 -1.0
630,486 + Rru_A0535 0.46 +1.4
630,486 + Rru_A0535 0.46 +0.5
630,486 + Rru_A0535 0.46 -1.7
630,486 + Rru_A0535 0.46 -0.8
630,486 + Rru_A0535 0.46 -0.1
630,486 + Rru_A0535 0.46 +0.9
630,486 + Rru_A0535 0.46 +0.6
630,487 - Rru_A0535 0.46 +0.8
630,487 - Rru_A0535 0.46 +0.2
630,705 + Rru_A0535 0.70 -3.3
630,705 + Rru_A0535 0.70 +0.8
630,705 + Rru_A0535 0.70 +0.1
630,706 - Rru_A0535 0.70 -3.5
630,706 - Rru_A0535 0.70 +0.7
630,706 - Rru_A0535 0.70 +0.5
630,720 + Rru_A0535 0.71 +1.4
630,720 + Rru_A0535 0.71 +0.4
630,720 + Rru_A0535 0.71 -1.7
630,721 - Rru_A0535 0.71 -1.3
630,721 - Rru_A0535 0.71 +1.9
630,721 - Rru_A0535 0.71 -1.2
630,721 - Rru_A0535 0.71 -3.0
630,721 - Rru_A0535 0.71 +0.9
630,947 + -1.5
630,947 + +2.6
630,948 - -1.0
630,948 - -3.4

Or see this region's nucleotide sequence