Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0335 and Rru_AR0014 are separated by 92 nucleotides Rru_AR0014 and Rru_A0336 are separated by 141 nucleotides Rru_A0336 and Rru_A0337 are separated by 157 nucleotides Rru_A0337 and Rru_A0338 are separated by 54 nucleotides Rru_A0338 and Rru_A0339 overlap by 4 nucleotides
Rru_A0335: Rru_A0335 - YbaK/prolyl-tRNA synthetase associated region (NCBI), at 407,067 to 407,606
_A0335
Rru_AR0014: Rru_AR0014 - tRNA-Ser (NCBI), at 407,699 to 407,790
_AR0014
Rru_A0336: Rru_A0336 - hypothetical protein (NCBI), at 407,932 to 408,774
_A0336
Rru_A0337: Rru_A0337 - Predicted transcriptional regulator (NCBI), at 408,932 to 409,318
_A0337
Rru_A0338: Rru_A0338 - hypothetical protein (NCBI), at 409,373 to 409,699
_A0338
Rru_A0339: Rru_A0339 - Short-chain dehydrogenase/reductase SDR (NCBI), at 409,696 to 410,487
_A0339
Position (kb) 407
408
409 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 407.025 kb on + strand at 407.025 kb on + strand at 407.026 kb on - strand at 407.059 kb on + strand at 407.059 kb on + strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.133 kb on - strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.604 kb on + strand at 407.608 kb on + strand at 407.888 kb on + strand at 407.908 kb on + strand at 408.020 kb on - strand, within Rru_A0336 at 408.265 kb on + strand, within Rru_A0336 at 408.265 kb on + strand, within Rru_A0336 at 408.265 kb on + strand, within Rru_A0336 at 408.266 kb on - strand, within Rru_A0336 at 408.266 kb on - strand, within Rru_A0336 at 408.398 kb on - strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.539 kb on + strand, within Rru_A0336 at 408.542 kb on + strand, within Rru_A0336 at 408.559 kb on + strand, within Rru_A0336 at 408.559 kb on + strand, within Rru_A0336 at 408.559 kb on + strand, within Rru_A0336 at 408.560 kb on - strand, within Rru_A0336 at 408.659 kb on + strand, within Rru_A0336 at 408.660 kb on - strand, within Rru_A0336 at 408.660 kb on - strand, within Rru_A0336 at 408.660 kb on - strand, within Rru_A0336 at 408.661 kb on + strand, within Rru_A0336 at 408.661 kb on + strand, within Rru_A0336 at 408.662 kb on - strand, within Rru_A0336 at 408.662 kb on - strand, within Rru_A0336 at 408.662 kb on - strand, within Rru_A0336 at 408.773 kb on - strand at 408.925 kb on + strand at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.075 kb on + strand, within Rru_A0337 at 409.076 kb on - strand, within Rru_A0337 at 409.290 kb on + strand at 409.339 kb on + strand at 409.340 kb on - strand at 409.406 kb on + strand, within Rru_A0338 at 409.446 kb on + strand, within Rru_A0338 at 409.446 kb on + strand, within Rru_A0338 at 409.446 kb on + strand, within Rru_A0338 at 409.447 kb on - strand, within Rru_A0338 at 409.547 kb on + strand, within Rru_A0338 at 409.570 kb on + strand, within Rru_A0338
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 407,025 + +1.2 407,025 + +0.4 407,026 - +0.3 407,059 + -0.4 407,059 + +1.6 407,060 - +0.6 407,060 - +0.5 407,132 + Rru_A0335 0.12 -0.4 407,132 + Rru_A0335 0.12 +0.0 407,132 + Rru_A0335 0.12 +0.7 407,132 + Rru_A0335 0.12 -1.0 407,133 - Rru_A0335 0.12 +1.5 407,180 + Rru_A0335 0.21 -0.9 407,180 + Rru_A0335 0.21 -0.0 407,180 + Rru_A0335 0.21 -1.1 407,604 + -0.4 407,608 + -2.1 407,888 + +0.1 407,908 + +1.1 408,020 - Rru_A0336 0.10 -3.2 408,265 + Rru_A0336 0.40 -1.4 408,265 + Rru_A0336 0.40 +0.8 408,265 + Rru_A0336 0.40 -1.5 408,266 - Rru_A0336 0.40 -0.0 408,266 - Rru_A0336 0.40 -0.0 408,398 - Rru_A0336 0.55 -4.0 408,520 + Rru_A0336 0.70 -0.2 408,520 + Rru_A0336 0.70 -1.8 408,520 + Rru_A0336 0.70 -0.2 408,520 + Rru_A0336 0.70 -4.0 408,521 - Rru_A0336 0.70 -2.2 408,521 - Rru_A0336 0.70 -0.8 408,521 - Rru_A0336 0.70 -0.6 408,521 - Rru_A0336 0.70 -2.5 408,521 - Rru_A0336 0.70 -2.1 408,521 - Rru_A0336 0.70 -0.5 408,521 - Rru_A0336 0.70 -4.0 408,521 - Rru_A0336 0.70 -0.1 408,521 - Rru_A0336 0.70 +1.9 408,539 + Rru_A0336 0.72 +1.0 408,542 + Rru_A0336 0.72 +0.1 408,559 + Rru_A0336 0.74 +0.4 408,559 + Rru_A0336 0.74 -2.5 408,559 + Rru_A0336 0.74 +0.4 408,560 - Rru_A0336 0.74 -2.8 408,659 + Rru_A0336 0.86 -0.1 408,660 - Rru_A0336 0.86 +0.2 408,660 - Rru_A0336 0.86 -1.4 408,660 - Rru_A0336 0.86 -3.1 408,661 + Rru_A0336 0.86 -0.6 408,661 + Rru_A0336 0.86 -0.0 408,662 - Rru_A0336 0.87 +3.6 408,662 - Rru_A0336 0.87 -0.9 408,662 - Rru_A0336 0.87 -0.8 408,773 - +0.2 408,925 + -0.4 409,029 + Rru_A0337 0.25 +0.2 409,029 + Rru_A0337 0.25 +2.6 409,029 + Rru_A0337 0.25 -3.7 409,029 + Rru_A0337 0.25 +0.6 409,029 + Rru_A0337 0.25 -3.2 409,075 + Rru_A0337 0.37 +1.7 409,076 - Rru_A0337 0.37 -3.2 409,290 + +0.4 409,339 + +0.8 409,340 - +0.7 409,406 + Rru_A0338 0.10 -0.7 409,446 + Rru_A0338 0.22 -3.2 409,446 + Rru_A0338 0.22 -0.7 409,446 + Rru_A0338 0.22 -1.6 409,447 - Rru_A0338 0.23 +2.0 409,547 + Rru_A0338 0.53 -1.0 409,570 + Rru_A0338 0.60 -2.9
Or see this region's nucleotide sequence