Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0334

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0333 and Rru_A0334 are separated by 475 nucleotidesRru_A0334 and Rru_A0335 are separated by 148 nucleotidesRru_A0335 and Rru_AR0014 are separated by 92 nucleotides Rru_A0333: Rru_A0333 - Ferritin and Dps (NCBI), at 405,004 to 405,480 _A0333 Rru_A0334: Rru_A0334 - Transcriptional Regulator, LysR family (NCBI), at 405,956 to 406,918 _A0334 Rru_A0335: Rru_A0335 - YbaK/prolyl-tRNA synthetase associated region (NCBI), at 407,067 to 407,606 _A0335 Rru_AR0014: Rru_AR0014 - tRNA-Ser (NCBI), at 407,699 to 407,790 _AR0014 Position (kb) 405 406 407Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 405.019 kb on - strandat 405.019 kb on - strandat 405.222 kb on - strand, within Rru_A0333at 405.230 kb on + strand, within Rru_A0333at 405.248 kb on + strand, within Rru_A0333at 405.305 kb on + strand, within Rru_A0333at 405.305 kb on + strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.366 kb on - strand, within Rru_A0333at 405.384 kb on - strand, within Rru_A0333at 405.390 kb on + strand, within Rru_A0333at 405.391 kb on - strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.608 kb on - strandat 405.609 kb on + strandat 405.879 kb on + strandat 405.879 kb on + strandat 405.880 kb on - strandat 405.936 kb on - strandat 406.280 kb on + strand, within Rru_A0334at 406.280 kb on + strand, within Rru_A0334at 406.280 kb on + strand, within Rru_A0334at 406.280 kb on + strand, within Rru_A0334at 406.281 kb on - strand, within Rru_A0334at 406.281 kb on - strand, within Rru_A0334at 406.281 kb on - strand, within Rru_A0334at 406.319 kb on + strand, within Rru_A0334at 406.319 kb on + strand, within Rru_A0334at 406.320 kb on - strand, within Rru_A0334at 407.025 kb on + strandat 407.025 kb on + strandat 407.026 kb on - strandat 407.059 kb on + strandat 407.059 kb on + strandat 407.060 kb on - strandat 407.060 kb on - strandat 407.132 kb on + strand, within Rru_A0335at 407.132 kb on + strand, within Rru_A0335at 407.132 kb on + strand, within Rru_A0335at 407.132 kb on + strand, within Rru_A0335at 407.133 kb on - strand, within Rru_A0335at 407.180 kb on + strand, within Rru_A0335at 407.180 kb on + strand, within Rru_A0335at 407.180 kb on + strand, within Rru_A0335at 407.604 kb on + strandat 407.608 kb on + strandat 407.888 kb on + strandat 407.908 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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405,019 - -2.6
405,019 - -0.9
405,222 - Rru_A0333 0.46 +0.8
405,230 + Rru_A0333 0.47 +0.5
405,248 + Rru_A0333 0.51 +0.4
405,305 + Rru_A0333 0.63 -0.2
405,305 + Rru_A0333 0.63 +1.6
405,306 - Rru_A0333 0.63 -3.8
405,306 - Rru_A0333 0.63 +1.3
405,306 - Rru_A0333 0.63 -3.1
405,306 - Rru_A0333 0.63 +0.1
405,306 - Rru_A0333 0.63 +1.7
405,306 - Rru_A0333 0.63 -1.5
405,366 - Rru_A0333 0.76 -3.0
405,384 - Rru_A0333 0.80 +1.1
405,390 + Rru_A0333 0.81 -2.7
405,391 - Rru_A0333 0.81 -0.0
405,392 + Rru_A0333 0.81 +1.5
405,392 + Rru_A0333 0.81 +1.3
405,392 + Rru_A0333 0.81 -0.9
405,392 + Rru_A0333 0.81 +0.1
405,392 + Rru_A0333 0.81 -1.6
405,392 + Rru_A0333 0.81 -0.2
405,392 + Rru_A0333 0.81 +1.1
405,392 + Rru_A0333 0.81 -0.6
405,392 + Rru_A0333 0.81 +0.2
405,392 + Rru_A0333 0.81 -0.2
405,392 + Rru_A0333 0.81 -0.0
405,392 + Rru_A0333 0.81 +0.4
405,392 + Rru_A0333 0.81 +0.6
405,392 + Rru_A0333 0.81 -0.1
405,392 + Rru_A0333 0.81 +0.5
405,392 + Rru_A0333 0.81 +0.7
405,392 + Rru_A0333 0.81 -0.9
405,392 + Rru_A0333 0.81 +0.8
405,392 + Rru_A0333 0.81 +0.6
405,393 - Rru_A0333 0.82 -1.1
405,393 - Rru_A0333 0.82 +1.0
405,393 - Rru_A0333 0.82 -0.7
405,393 - Rru_A0333 0.82 -0.1
405,393 - Rru_A0333 0.82 -1.7
405,393 - Rru_A0333 0.82 -1.0
405,393 - Rru_A0333 0.82 -0.8
405,608 - -0.5
405,609 + +1.3
405,879 + +1.6
405,879 + +0.8
405,880 - -2.8
405,936 - +1.2
406,280 + Rru_A0334 0.34 -1.9
406,280 + Rru_A0334 0.34 -2.3
406,280 + Rru_A0334 0.34 -3.1
406,280 + Rru_A0334 0.34 -0.2
406,281 - Rru_A0334 0.34 -0.4
406,281 - Rru_A0334 0.34 -2.0
406,281 - Rru_A0334 0.34 -3.4
406,319 + Rru_A0334 0.38 -0.7
406,319 + Rru_A0334 0.38 -3.7
406,320 - Rru_A0334 0.38 -2.5
407,025 + +1.2
407,025 + +0.4
407,026 - +0.3
407,059 + -0.4
407,059 + +1.6
407,060 - +0.6
407,060 - +0.5
407,132 + Rru_A0335 0.12 -0.4
407,132 + Rru_A0335 0.12 +0.0
407,132 + Rru_A0335 0.12 +0.7
407,132 + Rru_A0335 0.12 -1.0
407,133 - Rru_A0335 0.12 +1.5
407,180 + Rru_A0335 0.21 -0.9
407,180 + Rru_A0335 0.21 -0.0
407,180 + Rru_A0335 0.21 -1.1
407,604 + -0.4
407,608 + -2.1
407,888 + +0.1
407,908 + +1.1

Or see this region's nucleotide sequence