Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0325

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0324 and Rru_A0325 are separated by 119 nucleotidesRru_A0325 and Rru_A0326 are separated by 269 nucleotides Rru_A0324: Rru_A0324 - Formate dehydrogenase, alpha subunit (NCBI), at 392,708 to 394,849 _A0324 Rru_A0325: Rru_A0325 - Molybdenum cofactor biosynthesis protein (NCBI), at 394,969 to 395,976 _A0325 Rru_A0326: Rru_A0326 - Transcriptional Regulator, NifA subfamily, Fis Family (NCBI), at 396,246 to 398,447 _A0326 Position (kb) 394 395 396Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 394.071 kb on - strand, within Rru_A0324at 394.103 kb on + strand, within Rru_A0324at 394.103 kb on + strand, within Rru_A0324at 394.191 kb on - strand, within Rru_A0324at 394.199 kb on - strand, within Rru_A0324at 394.241 kb on + strand, within Rru_A0324at 394.242 kb on - strand, within Rru_A0324at 394.256 kb on + strand, within Rru_A0324at 394.280 kb on + strand, within Rru_A0324at 394.280 kb on + strand, within Rru_A0324at 394.281 kb on - strand, within Rru_A0324at 394.283 kb on - strand, within Rru_A0324at 394.325 kb on + strand, within Rru_A0324at 394.325 kb on + strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.421 kb on + strand, within Rru_A0324at 394.460 kb on + strand, within Rru_A0324at 394.461 kb on - strand, within Rru_A0324at 394.461 kb on - strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.524 kb on - strand, within Rru_A0324at 394.526 kb on - strand, within Rru_A0324at 394.526 kb on - strand, within Rru_A0324at 394.526 kb on - strand, within Rru_A0324at 394.655 kb on + strandat 394.655 kb on + strandat 394.655 kb on + strandat 394.655 kb on + strandat 394.656 kb on - strandat 394.656 kb on - strandat 394.656 kb on - strandat 394.664 kb on + strandat 394.664 kb on + strandat 394.664 kb on + strandat 394.664 kb on + strandat 394.665 kb on - strandat 394.665 kb on - strandat 394.736 kb on + strandat 394.737 kb on - strandat 394.737 kb on - strandat 394.742 kb on + strandat 394.742 kb on + strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.808 kb on + strandat 394.808 kb on + strandat 394.808 kb on + strandat 394.808 kb on + strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.847 kb on + strandat 394.956 kb on - strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.018 kb on - strandat 395.018 kb on - strandat 395.062 kb on + strandat 395.680 kb on + strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.770 kb on - strand, within Rru_A0325at 395.914 kb on - strandat 395.914 kb on - strandat 395.914 kb on - strandat 395.914 kb on - strandat 395.955 kb on + strandat 396.002 kb on + strandat 396.002 kb on + strandat 396.002 kb on + strandat 396.003 kb on - strandat 396.012 kb on + strandat 396.013 kb on - strandat 396.094 kb on - strandat 396.111 kb on - strandat 396.178 kb on + strandat 396.179 kb on - strandat 396.179 kb on - strandat 396.219 kb on + strandat 396.219 kb on + strandat 396.326 kb on - strandat 396.381 kb on + strandat 396.382 kb on - strandat 396.399 kb on + strandat 396.400 kb on - strandat 396.546 kb on + strand, within Rru_A0326at 396.546 kb on + strand, within Rru_A0326at 396.547 kb on - strand, within Rru_A0326at 396.603 kb on + strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.678 kb on + strand, within Rru_A0326at 396.678 kb on + strand, within Rru_A0326at 396.678 kb on + strand, within Rru_A0326at 396.679 kb on - strand, within Rru_A0326at 396.967 kb on - strand, within Rru_A0326

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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394,071 - Rru_A0324 0.64 -2.5
394,103 + Rru_A0324 0.65 +0.4
394,103 + Rru_A0324 0.65 +0.5
394,191 - Rru_A0324 0.69 +0.2
394,199 - Rru_A0324 0.70 -3.3
394,241 + Rru_A0324 0.72 -0.1
394,242 - Rru_A0324 0.72 -1.3
394,256 + Rru_A0324 0.72 -2.0
394,280 + Rru_A0324 0.73 +2.6
394,280 + Rru_A0324 0.73 -2.1
394,281 - Rru_A0324 0.73 +0.8
394,283 - Rru_A0324 0.74 +0.5
394,325 + Rru_A0324 0.75 -1.2
394,325 + Rru_A0324 0.75 +0.8
394,326 - Rru_A0324 0.76 -0.5
394,326 - Rru_A0324 0.76 +0.6
394,326 - Rru_A0324 0.76 -0.8
394,326 - Rru_A0324 0.76 +0.7
394,421 + Rru_A0324 0.80 +0.3
394,460 + Rru_A0324 0.82 +0.3
394,461 - Rru_A0324 0.82 -2.1
394,461 - Rru_A0324 0.82 -4.4
394,523 + Rru_A0324 0.85 -0.2
394,523 + Rru_A0324 0.85 +0.3
394,523 + Rru_A0324 0.85 -1.0
394,523 + Rru_A0324 0.85 +0.3
394,524 - Rru_A0324 0.85 +0.3
394,526 - Rru_A0324 0.85 +0.7
394,526 - Rru_A0324 0.85 -0.4
394,526 - Rru_A0324 0.85 -1.0
394,655 + +0.2
394,655 + -0.8
394,655 + +1.0
394,655 + +0.1
394,656 - +1.1
394,656 - -0.4
394,656 - -2.6
394,664 + -2.3
394,664 + -0.2
394,664 + -0.7
394,664 + +0.1
394,665 - +0.4
394,665 - +1.0
394,736 + +2.4
394,737 - +1.1
394,737 - +0.1
394,742 + -1.3
394,742 + -0.7
394,743 - -0.7
394,743 - +0.3
394,743 - -0.6
394,743 - -3.8
394,743 - -3.9
394,743 - -1.1
394,743 - +2.4
394,808 + -5.2
394,808 + +0.4
394,808 + -4.2
394,808 + +0.0
394,809 - +1.5
394,809 - -1.2
394,809 - +0.7
394,809 - +1.0
394,809 - -0.9
394,809 - +1.2
394,847 + -0.5
394,956 - -1.4
395,017 + -2.7
395,017 + +1.8
395,017 + -1.3
395,017 + +0.3
395,017 + -0.1
395,017 + +0.3
395,017 + -1.0
395,017 + +0.0
395,018 - +0.2
395,018 - +0.7
395,062 + +0.1
395,680 + Rru_A0325 0.71 +0.9
395,681 - Rru_A0325 0.71 +1.4
395,681 - Rru_A0325 0.71 +0.7
395,681 - Rru_A0325 0.71 -0.9
395,770 - Rru_A0325 0.79 -0.8
395,914 - +0.5
395,914 - -2.3
395,914 - +0.6
395,914 - +1.8
395,955 + -2.5
396,002 + -2.1
396,002 + +0.4
396,002 + -0.9
396,003 - -2.3
396,012 + -0.7
396,013 - +1.5
396,094 - +1.1
396,111 - +1.0
396,178 + -0.6
396,179 - -0.1
396,179 - -2.7
396,219 + -0.7
396,219 + -1.8
396,326 - -3.1
396,381 + -1.1
396,382 - +1.0
396,399 + +0.2
396,400 - -1.4
396,546 + Rru_A0326 0.14 -2.3
396,546 + Rru_A0326 0.14 +0.9
396,547 - Rru_A0326 0.14 +0.6
396,603 + Rru_A0326 0.16 -2.5
396,604 - Rru_A0326 0.16 -0.6
396,604 - Rru_A0326 0.16 -3.0
396,604 - Rru_A0326 0.16 +1.1
396,604 - Rru_A0326 0.16 +0.6
396,604 - Rru_A0326 0.16 +0.5
396,674 + Rru_A0326 0.19 -0.3
396,674 + Rru_A0326 0.19 -2.1
396,674 + Rru_A0326 0.19 -4.7
396,674 + Rru_A0326 0.19 -0.4
396,674 + Rru_A0326 0.19 +2.2
396,678 + Rru_A0326 0.20 +0.9
396,678 + Rru_A0326 0.20 +1.1
396,678 + Rru_A0326 0.20 -1.2
396,679 - Rru_A0326 0.20 -1.4
396,967 - Rru_A0326 0.33 +1.2

Or see this region's nucleotide sequence