Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0283

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0282 and Rru_A0283 are separated by 280 nucleotidesRru_A0283 and Rru_A0284 are separated by 33 nucleotides Rru_A0282: Rru_A0282 - Protein of unknown function DUF204 (NCBI), at 346,930 to 347,511 _A0282 Rru_A0283: Rru_A0283 - hypothetical protein (NCBI), at 347,792 to 348,295 _A0283 Rru_A0284: Rru_A0284 - acetolactate synthase (NCBI), at 348,329 to 350,059 _A0284 Position (kb) 347 348 349Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 346.867 kb on - strandat 347.100 kb on + strand, within Rru_A0282at 347.100 kb on + strand, within Rru_A0282at 347.100 kb on + strand, within Rru_A0282at 347.387 kb on + strand, within Rru_A0282at 347.387 kb on + strand, within Rru_A0282at 347.535 kb on + strandat 347.536 kb on - strandat 347.716 kb on + strandat 347.716 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.891 kb on + strand, within Rru_A0283at 347.891 kb on + strand, within Rru_A0283at 347.891 kb on + strand, within Rru_A0283at 347.892 kb on - strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.273 kb on + strandat 348.273 kb on + strandat 348.274 kb on - strandat 348.349 kb on + strandat 348.406 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.462 kb on - strandat 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.563 kb on + strand, within Rru_A0284at 348.564 kb on - strand, within Rru_A0284at 348.564 kb on - strand, within Rru_A0284at 348.564 kb on - strand, within Rru_A0284at 348.565 kb on + strand, within Rru_A0284at 348.566 kb on - strand, within Rru_A0284at 348.566 kb on - strand, within Rru_A0284at 349.139 kb on + strand, within Rru_A0284at 349.139 kb on + strand, within Rru_A0284at 349.140 kb on - strand, within Rru_A0284at 349.140 kb on - strand, within Rru_A0284at 349.140 kb on - strand, within Rru_A0284at 349.177 kb on + strand, within Rru_A0284at 349.250 kb on + strand, within Rru_A0284at 349.251 kb on - strand, within Rru_A0284at 349.251 kb on - strand, within Rru_A0284at 349.253 kb on - strand, within Rru_A0284at 349.253 kb on - strand, within Rru_A0284at 349.294 kb on + strand, within Rru_A0284at 349.294 kb on + strand, within Rru_A0284at 349.295 kb on - strand, within Rru_A0284at 349.295 kb on - strand, within Rru_A0284

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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346,867 - +0.5
347,100 + Rru_A0282 0.29 +0.9
347,100 + Rru_A0282 0.29 -1.3
347,100 + Rru_A0282 0.29 -0.2
347,387 + Rru_A0282 0.79 -1.2
347,387 + Rru_A0282 0.79 +0.8
347,535 + -3.0
347,536 - +0.7
347,716 + -0.6
347,716 + -0.2
347,718 + -3.6
347,718 + +1.1
347,718 + -3.7
347,718 + -2.5
347,718 + +0.6
347,718 + -1.7
347,718 + -1.8
347,718 + +0.1
347,718 + -0.6
347,719 - -0.1
347,719 - +0.2
347,719 - +0.9
347,719 - -5.7
347,719 - -2.9
347,719 - +0.3
347,719 - +0.8
347,719 - -0.5
347,719 - -1.2
347,719 - +0.9
347,719 - -0.7
347,719 - +1.4
347,891 + Rru_A0283 0.20 -0.1
347,891 + Rru_A0283 0.20 +0.2
347,891 + Rru_A0283 0.20 +0.7
347,892 - Rru_A0283 0.20 +0.6
348,212 + Rru_A0283 0.83 +0.8
348,212 + Rru_A0283 0.83 -1.1
348,212 + Rru_A0283 0.83 -0.8
348,212 + Rru_A0283 0.83 +0.1
348,212 + Rru_A0283 0.83 +0.2
348,212 + Rru_A0283 0.83 -1.1
348,213 - Rru_A0283 0.84 +1.6
348,213 - Rru_A0283 0.84 +1.3
348,213 - Rru_A0283 0.84 +0.9
348,213 - Rru_A0283 0.84 +0.6
348,273 + +0.0
348,273 + -2.2
348,274 - +1.6
348,349 + -1.8
348,406 + +0.5
348,461 + -2.9
348,461 + -0.7
348,461 + +0.6
348,461 + +0.0
348,462 - -0.1
348,563 + Rru_A0284 0.14 -0.2
348,563 + Rru_A0284 0.14 +0.8
348,563 + Rru_A0284 0.14 -0.7
348,563 + Rru_A0284 0.14 -1.9
348,563 + Rru_A0284 0.14 -1.0
348,563 + Rru_A0284 0.14 -3.1
348,563 + Rru_A0284 0.14 -3.2
348,563 + Rru_A0284 0.14 +0.7
348,563 + Rru_A0284 0.14 +0.1
348,563 + Rru_A0284 0.14 +0.4
348,563 + Rru_A0284 0.14 +0.1
348,563 + Rru_A0284 0.14 +0.0
348,563 + Rru_A0284 0.14 -0.4
348,563 + Rru_A0284 0.14 -0.3
348,563 + Rru_A0284 0.14 +0.0
348,564 - Rru_A0284 0.14 -3.6
348,564 - Rru_A0284 0.14 +0.1
348,564 - Rru_A0284 0.14 -0.1
348,565 + Rru_A0284 0.14 -1.9
348,566 - Rru_A0284 0.14 +1.5
348,566 - Rru_A0284 0.14 +0.3
349,139 + Rru_A0284 0.47 +0.8
349,139 + Rru_A0284 0.47 +1.0
349,140 - Rru_A0284 0.47 +1.8
349,140 - Rru_A0284 0.47 +0.9
349,140 - Rru_A0284 0.47 +1.1
349,177 + Rru_A0284 0.49 -3.4
349,250 + Rru_A0284 0.53 +0.6
349,251 - Rru_A0284 0.53 +0.5
349,251 - Rru_A0284 0.53 -0.4
349,253 - Rru_A0284 0.53 +0.9
349,253 - Rru_A0284 0.53 -2.8
349,294 + Rru_A0284 0.56 +0.9
349,294 + Rru_A0284 0.56 -0.2
349,295 - Rru_A0284 0.56 +0.3
349,295 - Rru_A0284 0.56 +1.7

Or see this region's nucleotide sequence