Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0238 and Rru_A0239 are separated by 61 nucleotides Rru_A0239 and Rru_A0240 are separated by 12 nucleotides Rru_A0240 and Rru_A0241 are separated by 93 nucleotides Rru_A0241 and Rru_A0242 are separated by 14 nucleotides
Rru_A0238: Rru_A0238 - hypothetical protein (NCBI), at 294,092 to 294,277
_A0238
Rru_A0239: Rru_A0239 - hypothetical protein (NCBI), at 294,339 to 294,563
_A0239
Rru_A0240: Rru_A0240 - NUDIX hydrolase (NCBI), at 294,576 to 295,127
_A0240
Rru_A0241: Rru_A0241 - DNA methylase N-4/N-6 (NCBI), at 295,221 to 298,040
_A0241
Rru_A0242: Rru_A0242 - Type III restriction enzyme, res subunit (NCBI), at 298,055 to 301,099
_A0242
Position (kb) 295
296
297
298
299 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 294.492 kb on + strand, within Rru_A0239 at 294.492 kb on + strand, within Rru_A0239 at 294.492 kb on + strand, within Rru_A0239 at 294.493 kb on - strand, within Rru_A0239 at 294.493 kb on - strand, within Rru_A0239 at 294.493 kb on - strand, within Rru_A0239 at 294.493 kb on - strand, within Rru_A0239 at 294.493 kb on - strand, within Rru_A0239 at 294.494 kb on + strand, within Rru_A0239 at 294.494 kb on + strand, within Rru_A0239 at 294.495 kb on - strand, within Rru_A0239 at 294.495 kb on - strand, within Rru_A0239 at 294.516 kb on + strand, within Rru_A0239 at 294.518 kb on + strand, within Rru_A0239 at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.544 kb on - strand at 294.872 kb on + strand, within Rru_A0240 at 294.872 kb on + strand, within Rru_A0240 at 294.873 kb on - strand, within Rru_A0240 at 294.874 kb on + strand, within Rru_A0240 at 294.875 kb on - strand, within Rru_A0240 at 294.875 kb on - strand, within Rru_A0240 at 294.875 kb on - strand, within Rru_A0240 at 294.875 kb on - strand, within Rru_A0240 at 294.894 kb on + strand, within Rru_A0240 at 294.895 kb on - strand, within Rru_A0240 at 294.895 kb on - strand, within Rru_A0240 at 294.895 kb on - strand, within Rru_A0240 at 294.896 kb on + strand, within Rru_A0240 at 294.896 kb on + strand, within Rru_A0240 at 294.897 kb on - strand, within Rru_A0240 at 294.897 kb on - strand, within Rru_A0240 at 294.930 kb on + strand, within Rru_A0240 at 294.931 kb on - strand, within Rru_A0240 at 294.931 kb on - strand, within Rru_A0240 at 294.931 kb on - strand, within Rru_A0240 at 294.931 kb on - strand, within Rru_A0240 at 295.029 kb on + strand, within Rru_A0240 at 295.093 kb on - strand at 295.093 kb on - strand at 295.114 kb on - strand at 295.114 kb on - strand at 295.114 kb on - strand at 295.114 kb on - strand at 295.125 kb on + strand at 295.125 kb on + strand at 295.126 kb on - strand at 295.222 kb on + strand at 295.222 kb on + strand at 295.223 kb on - strand at 295.223 kb on - strand at 295.223 kb on - strand at 295.323 kb on - strand at 295.323 kb on - strand at 295.390 kb on + strand at 295.390 kb on + strand at 295.390 kb on + strand at 295.390 kb on + strand at 295.391 kb on - strand at 295.391 kb on - strand at 295.391 kb on - strand at 295.391 kb on - strand at 295.391 kb on - strand at 295.391 kb on - strand at 295.391 kb on - strand at 295.414 kb on + strand at 295.415 kb on - strand at 295.415 kb on - strand at 295.446 kb on - strand at 295.448 kb on - strand at 295.523 kb on + strand, within Rru_A0241 at 295.523 kb on + strand, within Rru_A0241 at 295.524 kb on - strand, within Rru_A0241 at 296.141 kb on - strand, within Rru_A0241 at 296.141 kb on - strand, within Rru_A0241 at 296.153 kb on - strand, within Rru_A0241 at 296.158 kb on + strand, within Rru_A0241 at 296.158 kb on + strand, within Rru_A0241 at 296.397 kb on - strand, within Rru_A0241 at 296.429 kb on - strand, within Rru_A0241 at 296.533 kb on + strand, within Rru_A0241 at 296.533 kb on + strand, within Rru_A0241 at 296.533 kb on + strand, within Rru_A0241 at 296.533 kb on + strand, within Rru_A0241 at 296.533 kb on + strand, within Rru_A0241 at 296.534 kb on - strand, within Rru_A0241 at 296.534 kb on - strand, within Rru_A0241 at 296.534 kb on - strand, within Rru_A0241 at 296.534 kb on - strand, within Rru_A0241 at 296.534 kb on - strand, within Rru_A0241 at 296.534 kb on - strand, within Rru_A0241 at 296.536 kb on + strand, within Rru_A0241 at 296.536 kb on + strand, within Rru_A0241 at 296.536 kb on + strand, within Rru_A0241 at 296.537 kb on - strand, within Rru_A0241 at 296.543 kb on - strand, within Rru_A0241 at 296.673 kb on + strand, within Rru_A0241 at 296.674 kb on - strand, within Rru_A0241 at 296.697 kb on + strand, within Rru_A0241 at 296.697 kb on + strand, within Rru_A0241 at 296.697 kb on + strand, within Rru_A0241 at 297.056 kb on + strand, within Rru_A0241 at 297.061 kb on - strand, within Rru_A0241 at 297.078 kb on + strand, within Rru_A0241 at 297.173 kb on + strand, within Rru_A0241 at 297.264 kb on + strand, within Rru_A0241 at 297.265 kb on - strand, within Rru_A0241 at 297.406 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.416 kb on - strand, within Rru_A0241 at 297.416 kb on - strand, within Rru_A0241 at 297.569 kb on - strand, within Rru_A0241 at 297.569 kb on - strand, within Rru_A0241 at 297.676 kb on + strand, within Rru_A0241 at 297.676 kb on + strand, within Rru_A0241 at 297.676 kb on + strand, within Rru_A0241 at 297.676 kb on + strand, within Rru_A0241 at 297.677 kb on - strand, within Rru_A0241 at 297.677 kb on - strand, within Rru_A0241 at 297.677 kb on - strand, within Rru_A0241 at 297.822 kb on - strand at 297.822 kb on - strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.824 kb on - strand at 297.824 kb on - strand at 297.919 kb on + strand at 297.919 kb on + strand at 298.040 kb on + strand at 298.185 kb on + strand at 298.185 kb on + strand at 298.185 kb on + strand at 298.185 kb on + strand at 298.185 kb on + strand at 298.186 kb on - strand at 298.186 kb on - strand at 298.306 kb on - strand at 298.306 kb on - strand at 298.369 kb on - strand, within Rru_A0242 at 298.495 kb on + strand, within Rru_A0242 at 298.495 kb on + strand, within Rru_A0242 at 298.530 kb on + strand, within Rru_A0242 at 298.530 kb on + strand, within Rru_A0242 at 298.530 kb on + strand, within Rru_A0242 at 298.530 kb on + strand, within Rru_A0242 at 298.530 kb on + strand, within Rru_A0242 at 298.531 kb on - strand, within Rru_A0242 at 298.531 kb on - strand, within Rru_A0242 at 298.531 kb on - strand, within Rru_A0242 at 298.531 kb on - strand, within Rru_A0242 at 298.560 kb on + strand, within Rru_A0242 at 298.582 kb on + strand, within Rru_A0242 at 298.627 kb on - strand, within Rru_A0242 at 298.759 kb on - strand, within Rru_A0242 at 298.759 kb on - strand, within Rru_A0242 at 298.807 kb on + strand, within Rru_A0242 at 298.808 kb on - strand, within Rru_A0242
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 294,492 + Rru_A0239 0.68 +1.0 294,492 + Rru_A0239 0.68 -1.7 294,492 + Rru_A0239 0.68 -3.2 294,493 - Rru_A0239 0.68 +0.6 294,493 - Rru_A0239 0.68 -0.5 294,493 - Rru_A0239 0.68 +2.7 294,493 - Rru_A0239 0.68 -0.3 294,493 - Rru_A0239 0.68 +0.2 294,494 + Rru_A0239 0.69 +0.2 294,494 + Rru_A0239 0.69 +0.8 294,495 - Rru_A0239 0.69 -3.2 294,495 - Rru_A0239 0.69 +0.5 294,516 + Rru_A0239 0.79 -1.0 294,518 + Rru_A0239 0.80 -1.6 294,543 + +2.1 294,543 + -0.9 294,543 + +0.4 294,543 + +1.3 294,543 + -2.5 294,543 + -1.8 294,543 + +0.5 294,543 + -0.4 294,544 - +0.3 294,872 + Rru_A0240 0.54 -0.5 294,872 + Rru_A0240 0.54 +0.3 294,873 - Rru_A0240 0.54 +0.1 294,874 + Rru_A0240 0.54 -1.2 294,875 - Rru_A0240 0.54 +1.6 294,875 - Rru_A0240 0.54 -1.1 294,875 - Rru_A0240 0.54 +0.2 294,875 - Rru_A0240 0.54 +0.5 294,894 + Rru_A0240 0.58 -1.6 294,895 - Rru_A0240 0.58 -1.9 294,895 - Rru_A0240 0.58 +1.4 294,895 - Rru_A0240 0.58 +2.3 294,896 + Rru_A0240 0.58 +2.4 294,896 + Rru_A0240 0.58 -0.2 294,897 - Rru_A0240 0.58 -0.8 294,897 - Rru_A0240 0.58 -2.4 294,930 + Rru_A0240 0.64 -3.3 294,931 - Rru_A0240 0.64 -0.8 294,931 - Rru_A0240 0.64 +1.0 294,931 - Rru_A0240 0.64 -0.3 294,931 - Rru_A0240 0.64 -0.3 295,029 + Rru_A0240 0.82 -0.9 295,093 - -1.3 295,093 - +0.5 295,114 - -1.1 295,114 - +0.8 295,114 - -2.0 295,114 - -1.7 295,125 + +0.5 295,125 + +0.6 295,126 - -1.9 295,222 + +2.0 295,222 + +1.7 295,223 - +0.2 295,223 - -3.3 295,223 - +0.2 295,323 - +2.1 295,323 - +1.1 295,390 + +1.2 295,390 + -0.5 295,390 + +0.1 295,390 + +1.0 295,391 - -4.2 295,391 - -2.4 295,391 - -3.5 295,391 - -1.4 295,391 - -0.1 295,391 - +0.5 295,391 - +0.1 295,414 + -1.9 295,415 - -0.5 295,415 - +0.1 295,446 - -2.4 295,448 - -1.8 295,523 + Rru_A0241 0.11 -0.9 295,523 + Rru_A0241 0.11 -0.9 295,524 - Rru_A0241 0.11 -2.0 296,141 - Rru_A0241 0.33 +0.0 296,141 - Rru_A0241 0.33 +0.8 296,153 - Rru_A0241 0.33 -0.2 296,158 + Rru_A0241 0.33 -0.8 296,158 + Rru_A0241 0.33 -1.4 296,397 - Rru_A0241 0.42 -0.3 296,429 - Rru_A0241 0.43 -3.7 296,533 + Rru_A0241 0.47 +0.6 296,533 + Rru_A0241 0.47 +1.0 296,533 + Rru_A0241 0.47 -2.4 296,533 + Rru_A0241 0.47 -0.7 296,533 + Rru_A0241 0.47 -1.0 296,534 - Rru_A0241 0.47 -3.2 296,534 - Rru_A0241 0.47 -5.0 296,534 - Rru_A0241 0.47 +0.7 296,534 - Rru_A0241 0.47 +1.3 296,534 - Rru_A0241 0.47 +2.2 296,534 - Rru_A0241 0.47 -0.9 296,536 + Rru_A0241 0.47 -3.2 296,536 + Rru_A0241 0.47 -0.3 296,536 + Rru_A0241 0.47 -1.4 296,537 - Rru_A0241 0.47 -1.2 296,543 - Rru_A0241 0.47 -0.2 296,673 + Rru_A0241 0.51 -2.5 296,674 - Rru_A0241 0.52 -3.7 296,697 + Rru_A0241 0.52 +0.3 296,697 + Rru_A0241 0.52 +0.3 296,697 + Rru_A0241 0.52 -0.0 297,056 + Rru_A0241 0.65 -3.2 297,061 - Rru_A0241 0.65 -0.3 297,078 + Rru_A0241 0.66 -1.8 297,173 + Rru_A0241 0.69 -2.2 297,264 + Rru_A0241 0.72 -0.6 297,265 - Rru_A0241 0.72 +0.8 297,406 + Rru_A0241 0.77 -2.7 297,415 + Rru_A0241 0.78 -0.3 297,415 + Rru_A0241 0.78 +1.1 297,415 + Rru_A0241 0.78 -1.1 297,415 + Rru_A0241 0.78 -0.5 297,415 + Rru_A0241 0.78 -0.4 297,415 + Rru_A0241 0.78 +0.5 297,415 + Rru_A0241 0.78 -1.4 297,415 + Rru_A0241 0.78 -1.2 297,416 - Rru_A0241 0.78 +0.4 297,416 - Rru_A0241 0.78 -0.3 297,569 - Rru_A0241 0.83 -2.2 297,569 - Rru_A0241 0.83 -4.0 297,676 + Rru_A0241 0.87 -0.2 297,676 + Rru_A0241 0.87 +0.2 297,676 + Rru_A0241 0.87 -0.3 297,676 + Rru_A0241 0.87 +1.0 297,677 - Rru_A0241 0.87 -0.2 297,677 - Rru_A0241 0.87 +1.2 297,677 - Rru_A0241 0.87 +0.0 297,822 - -3.5 297,822 - +0.2 297,823 + +0.6 297,823 + +2.1 297,823 + +0.5 297,823 + +0.8 297,823 + +0.1 297,824 - -1.4 297,824 - +0.8 297,919 + -2.0 297,919 + +1.5 298,040 + -0.1 298,185 + -2.0 298,185 + +1.2 298,185 + -1.7 298,185 + -2.6 298,185 + -3.5 298,186 - +0.6 298,186 - -0.3 298,306 - +0.4 298,306 - +2.1 298,369 - Rru_A0242 0.10 -0.1 298,495 + Rru_A0242 0.14 -0.6 298,495 + Rru_A0242 0.14 -0.8 298,530 + Rru_A0242 0.16 -3.3 298,530 + Rru_A0242 0.16 -2.9 298,530 + Rru_A0242 0.16 -1.6 298,530 + Rru_A0242 0.16 -0.1 298,530 + Rru_A0242 0.16 +1.6 298,531 - Rru_A0242 0.16 -0.9 298,531 - Rru_A0242 0.16 -1.2 298,531 - Rru_A0242 0.16 +0.9 298,531 - Rru_A0242 0.16 -0.5 298,560 + Rru_A0242 0.17 +0.6 298,582 + Rru_A0242 0.17 +1.7 298,627 - Rru_A0242 0.19 -0.9 298,759 - Rru_A0242 0.23 -3.8 298,759 - Rru_A0242 0.23 -4.8 298,807 + Rru_A0242 0.25 -1.1 298,808 - Rru_A0242 0.25 -3.6
Or see this region's nucleotide sequence