Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0195

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0193 and Rru_A0194 are separated by 220 nucleotidesRru_A0194 and Rru_A0195 are separated by 226 nucleotidesRru_A0195 and Rru_A0196 are separated by 80 nucleotides Rru_A0193: Rru_A0193 - Beta-ketoacyl synthase (NCBI), at 235,912 to 237,135 _A0193 Rru_A0194: Rru_A0194 - hypothetical protein (NCBI), at 237,356 to 237,643 _A0194 Rru_A0195: Rru_A0195 - hypothetical protein (NCBI), at 237,870 to 243,644 _A0195 Rru_A0196: Rru_A0196 - hypothetical protein (NCBI), at 243,725 to 244,675 _A0196 Position (kb) 237 238 239 240 241 242 243 244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 237.154 kb on - strandat 237.157 kb on + strandat 237.158 kb on - strandat 237.159 kb on + strandat 237.159 kb on + strandat 237.211 kb on + strandat 237.226 kb on + strandat 237.641 kb on + strandat 237.668 kb on - strandat 237.693 kb on + strandat 237.802 kb on + strandat 237.802 kb on + strandat 237.802 kb on + strandat 237.802 kb on + strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.879 kb on + strandat 237.879 kb on + strandat 237.879 kb on + strandat 237.879 kb on + strandat 237.880 kb on - strandat 237.880 kb on - strandat 237.880 kb on - strandat 237.958 kb on - strandat 237.958 kb on - strandat 237.963 kb on + strandat 237.963 kb on + strandat 237.964 kb on - strandat 237.964 kb on - strandat 238.029 kb on + strandat 238.098 kb on + strandat 238.099 kb on - strandat 238.099 kb on - strandat 238.230 kb on + strandat 238.230 kb on + strandat 238.230 kb on + strandat 238.230 kb on + strandat 238.231 kb on - strandat 238.231 kb on - strandat 238.278 kb on + strandat 238.278 kb on + strandat 238.279 kb on - strandat 238.314 kb on + strandat 238.315 kb on - strandat 238.615 kb on - strand, within Rru_A0195at 238.650 kb on + strand, within Rru_A0195at 238.651 kb on - strand, within Rru_A0195at 238.651 kb on - strand, within Rru_A0195at 238.651 kb on - strand, within Rru_A0195at 238.651 kb on - strand, within Rru_A0195at 238.651 kb on - strand, within Rru_A0195at 238.651 kb on - strand, within Rru_A0195at 238.651 kb on - strand, within Rru_A0195at 238.737 kb on + strand, within Rru_A0195at 238.737 kb on + strand, within Rru_A0195at 238.738 kb on - strand, within Rru_A0195at 238.771 kb on - strand, within Rru_A0195at 238.863 kb on + strand, within Rru_A0195at 238.864 kb on - strand, within Rru_A0195at 239.031 kb on + strand, within Rru_A0195at 239.031 kb on + strand, within Rru_A0195at 239.032 kb on - strand, within Rru_A0195at 239.032 kb on - strand, within Rru_A0195at 239.032 kb on - strand, within Rru_A0195at 239.032 kb on - strand, within Rru_A0195at 239.032 kb on - strand, within Rru_A0195at 239.112 kb on - strand, within Rru_A0195at 239.270 kb on + strand, within Rru_A0195at 239.271 kb on - strand, within Rru_A0195at 239.271 kb on - strand, within Rru_A0195at 239.548 kb on + strand, within Rru_A0195at 239.559 kb on + strand, within Rru_A0195at 239.559 kb on + strand, within Rru_A0195at 239.560 kb on - strand, within Rru_A0195at 239.560 kb on - strand, within Rru_A0195at 239.637 kb on + strand, within Rru_A0195at 239.637 kb on + strand, within Rru_A0195at 239.637 kb on + strand, within Rru_A0195at 239.637 kb on + strand, within Rru_A0195at 239.637 kb on + strand, within Rru_A0195at 239.638 kb on - strand, within Rru_A0195at 239.638 kb on - strand, within Rru_A0195at 239.688 kb on + strand, within Rru_A0195at 239.688 kb on + strand, within Rru_A0195at 239.688 kb on + strand, within Rru_A0195at 239.689 kb on - strand, within Rru_A0195at 239.689 kb on - strand, within Rru_A0195at 239.689 kb on - strand, within Rru_A0195at 239.697 kb on + strand, within Rru_A0195at 239.697 kb on + strand, within Rru_A0195at 239.698 kb on - strand, within Rru_A0195at 239.706 kb on + strand, within Rru_A0195at 239.715 kb on + strand, within Rru_A0195at 239.716 kb on - strand, within Rru_A0195at 239.716 kb on - strand, within Rru_A0195at 239.716 kb on - strand, within Rru_A0195at 239.802 kb on + strand, within Rru_A0195at 239.804 kb on + strand, within Rru_A0195at 239.804 kb on + strand, within Rru_A0195at 239.804 kb on + strand, within Rru_A0195at 239.804 kb on + strand, within Rru_A0195at 239.805 kb on - strand, within Rru_A0195at 239.805 kb on - strand, within Rru_A0195at 239.805 kb on - strand, within Rru_A0195at 239.872 kb on - strand, within Rru_A0195at 239.913 kb on + strand, within Rru_A0195at 239.916 kb on + strand, within Rru_A0195at 239.917 kb on - strand, within Rru_A0195at 239.917 kb on - strand, within Rru_A0195at 239.917 kb on - strand, within Rru_A0195at 239.917 kb on - strand, within Rru_A0195at 239.917 kb on - strand, within Rru_A0195at 240.064 kb on - strand, within Rru_A0195at 240.064 kb on - strand, within Rru_A0195at 240.064 kb on - strand, within Rru_A0195at 240.073 kb on - strand, within Rru_A0195at 240.207 kb on + strand, within Rru_A0195at 240.207 kb on + strand, within Rru_A0195at 240.207 kb on + strand, within Rru_A0195at 240.207 kb on + strand, within Rru_A0195at 240.207 kb on + strand, within Rru_A0195at 240.207 kb on + strand, within Rru_A0195at 240.208 kb on - strand, within Rru_A0195at 240.208 kb on - strand, within Rru_A0195at 240.208 kb on - strand, within Rru_A0195at 240.208 kb on - strand, within Rru_A0195at 240.208 kb on - strand, within Rru_A0195at 240.208 kb on - strand, within Rru_A0195at 240.208 kb on - strand, within Rru_A0195at 240.590 kb on + strand, within Rru_A0195at 240.591 kb on - strand, within Rru_A0195at 240.735 kb on + strand, within Rru_A0195at 240.735 kb on + strand, within Rru_A0195at 240.736 kb on - strand, within Rru_A0195at 240.736 kb on - strand, within Rru_A0195at 240.741 kb on + strand, within Rru_A0195at 240.741 kb on + strand, within Rru_A0195at 240.741 kb on + strand, within Rru_A0195at 240.741 kb on + strand, within Rru_A0195at 240.742 kb on - strand, within Rru_A0195at 240.742 kb on - strand, within Rru_A0195at 240.742 kb on - strand, within Rru_A0195at 240.742 kb on - strand, within Rru_A0195at 240.742 kb on - strand, within Rru_A0195at 240.924 kb on - strand, within Rru_A0195at 240.969 kb on + strand, within Rru_A0195at 240.969 kb on + strand, within Rru_A0195at 240.969 kb on + strand, within Rru_A0195at 240.969 kb on + strand, within Rru_A0195at 240.970 kb on - strand, within Rru_A0195at 240.970 kb on - strand, within Rru_A0195at 240.970 kb on - strand, within Rru_A0195at 240.970 kb on - strand, within Rru_A0195at 240.970 kb on - strand, within Rru_A0195at 240.970 kb on - strand, within Rru_A0195at 241.089 kb on + strand, within Rru_A0195at 241.089 kb on + strand, within Rru_A0195at 241.089 kb on + strand, within Rru_A0195at 241.140 kb on + strand, within Rru_A0195at 241.140 kb on + strand, within Rru_A0195at 241.141 kb on - strand, within Rru_A0195at 241.141 kb on - strand, within Rru_A0195at 241.141 kb on - strand, within Rru_A0195at 241.146 kb on + strand, within Rru_A0195at 241.151 kb on + strand, within Rru_A0195at 241.151 kb on + strand, within Rru_A0195at 241.152 kb on - strand, within Rru_A0195at 241.152 kb on - strand, within Rru_A0195at 241.152 kb on - strand, within Rru_A0195at 241.152 kb on - strand, within Rru_A0195at 241.152 kb on - strand, within Rru_A0195at 241.315 kb on - strand, within Rru_A0195at 241.315 kb on - strand, within Rru_A0195at 241.317 kb on - strand, within Rru_A0195at 241.329 kb on + strand, within Rru_A0195at 241.330 kb on - strand, within Rru_A0195at 241.330 kb on - strand, within Rru_A0195at 241.467 kb on + strand, within Rru_A0195at 241.468 kb on - strand, within Rru_A0195at 241.468 kb on - strand, within Rru_A0195at 241.468 kb on - strand, within Rru_A0195at 241.542 kb on + strand, within Rru_A0195at 241.543 kb on - strand, within Rru_A0195at 241.596 kb on + strand, within Rru_A0195at 241.596 kb on + strand, within Rru_A0195at 241.596 kb on + strand, within Rru_A0195at 241.597 kb on - strand, within Rru_A0195at 241.597 kb on - strand, within Rru_A0195at 241.597 kb on - strand, within Rru_A0195at 241.599 kb on + strand, within Rru_A0195at 241.599 kb on + strand, within Rru_A0195at 241.599 kb on + strand, within Rru_A0195at 241.944 kb on + strand, within Rru_A0195at 241.944 kb on + strand, within Rru_A0195at 241.944 kb on + strand, within Rru_A0195at 241.944 kb on + strand, within Rru_A0195at 241.945 kb on - strand, within Rru_A0195at 241.945 kb on - strand, within Rru_A0195at 241.945 kb on - strand, within Rru_A0195at 242.034 kb on - strand, within Rru_A0195at 242.085 kb on + strand, within Rru_A0195at 242.086 kb on - strand, within Rru_A0195at 242.113 kb on - strand, within Rru_A0195at 242.113 kb on - strand, within Rru_A0195at 242.311 kb on - strand, within Rru_A0195at 242.311 kb on - strand, within Rru_A0195at 242.334 kb on + strand, within Rru_A0195at 242.335 kb on - strand, within Rru_A0195at 242.335 kb on - strand, within Rru_A0195at 242.335 kb on - strand, within Rru_A0195at 242.335 kb on - strand, within Rru_A0195at 242.335 kb on - strand, within Rru_A0195at 242.488 kb on + strand, within Rru_A0195at 242.488 kb on + strand, within Rru_A0195at 242.514 kb on + strand, within Rru_A0195at 242.515 kb on - strand, within Rru_A0195at 242.515 kb on - strand, within Rru_A0195at 242.673 kb on + strand, within Rru_A0195at 242.673 kb on + strand, within Rru_A0195at 242.674 kb on - strand, within Rru_A0195at 242.674 kb on - strand, within Rru_A0195at 242.674 kb on - strand, within Rru_A0195at 242.675 kb on + strand, within Rru_A0195at 242.781 kb on - strand, within Rru_A0195at 242.988 kb on + strand, within Rru_A0195at 242.988 kb on + strand, within Rru_A0195at 242.988 kb on + strand, within Rru_A0195at 242.989 kb on - strand, within Rru_A0195at 242.989 kb on - strand, within Rru_A0195at 242.989 kb on - strand, within Rru_A0195at 242.989 kb on - strand, within Rru_A0195at 242.989 kb on - strand, within Rru_A0195at 243.009 kb on + strand, within Rru_A0195at 243.324 kb on + strandat 243.325 kb on - strandat 243.326 kb on + strandat 243.354 kb on + strandat 243.355 kb on - strandat 243.355 kb on - strandat 243.477 kb on + strandat 243.516 kb on + strandat 243.516 kb on + strandat 243.516 kb on + strandat 243.517 kb on - strandat 243.517 kb on - strandat 243.517 kb on - strandat 243.517 kb on - strandat 243.517 kb on - strandat 243.517 kb on - strandat 243.518 kb on + strandat 243.519 kb on - strandat 243.519 kb on - strandat 243.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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237,154 - -0.0
237,157 + -1.4
237,158 - +0.5
237,159 + +0.2
237,159 + -0.3
237,211 + -4.0
237,226 + -3.0
237,641 + -2.1
237,668 - -0.4
237,693 + -0.7
237,802 + +1.8
237,802 + -0.1
237,802 + -0.5
237,802 + -3.6
237,803 - +0.4
237,803 - -3.4
237,803 - -2.7
237,803 - +1.4
237,803 - +1.1
237,879 + +0.5
237,879 + +1.0
237,879 + -1.1
237,879 + -1.1
237,880 - -0.2
237,880 - -1.3
237,880 - -0.6
237,958 - -3.0
237,958 - -1.7
237,963 + -2.3
237,963 + -2.2
237,964 - -3.2
237,964 - +1.5
238,029 + -0.4
238,098 + -0.7
238,099 - -2.1
238,099 - -4.5
238,230 + +0.5
238,230 + -0.1
238,230 + -3.1
238,230 + +1.0
238,231 - +0.4
238,231 - +0.4
238,278 + -3.8
238,278 + +1.4
238,279 - -2.0
238,314 + +0.0
238,315 - +1.1
238,615 - Rru_A0195 0.13 +0.3
238,650 + Rru_A0195 0.14 -3.2
238,651 - Rru_A0195 0.14 -3.2
238,651 - Rru_A0195 0.14 -0.3
238,651 - Rru_A0195 0.14 -2.4
238,651 - Rru_A0195 0.14 -2.8
238,651 - Rru_A0195 0.14 +0.5
238,651 - Rru_A0195 0.14 -0.2
238,651 - Rru_A0195 0.14 -0.1
238,737 + Rru_A0195 0.15 -1.5
238,737 + Rru_A0195 0.15 -1.7
238,738 - Rru_A0195 0.15 +0.3
238,771 - Rru_A0195 0.16 -1.8
238,863 + Rru_A0195 0.17 -3.5
238,864 - Rru_A0195 0.17 +0.5
239,031 + Rru_A0195 0.20 -3.3
239,031 + Rru_A0195 0.20 -0.5
239,032 - Rru_A0195 0.20 -0.5
239,032 - Rru_A0195 0.20 +0.4
239,032 - Rru_A0195 0.20 +0.2
239,032 - Rru_A0195 0.20 +1.6
239,032 - Rru_A0195 0.20 +1.1
239,112 - Rru_A0195 0.22 +0.4
239,270 + Rru_A0195 0.24 -4.3
239,271 - Rru_A0195 0.24 -1.4
239,271 - Rru_A0195 0.24 +0.5
239,548 + Rru_A0195 0.29 -3.3
239,559 + Rru_A0195 0.29 -2.5
239,559 + Rru_A0195 0.29 -1.1
239,560 - Rru_A0195 0.29 +0.9
239,560 - Rru_A0195 0.29 +1.2
239,637 + Rru_A0195 0.31 -0.5
239,637 + Rru_A0195 0.31 -3.3
239,637 + Rru_A0195 0.31 -0.1
239,637 + Rru_A0195 0.31 -2.0
239,637 + Rru_A0195 0.31 -3.3
239,638 - Rru_A0195 0.31 +0.8
239,638 - Rru_A0195 0.31 -2.3
239,688 + Rru_A0195 0.31 -0.2
239,688 + Rru_A0195 0.31 +0.7
239,688 + Rru_A0195 0.31 -3.0
239,689 - Rru_A0195 0.31 +0.1
239,689 - Rru_A0195 0.31 -0.3
239,689 - Rru_A0195 0.31 +0.7
239,697 + Rru_A0195 0.32 +1.5
239,697 + Rru_A0195 0.32 -0.4
239,698 - Rru_A0195 0.32 +0.8
239,706 + Rru_A0195 0.32 -1.7
239,715 + Rru_A0195 0.32 -0.4
239,716 - Rru_A0195 0.32 +0.9
239,716 - Rru_A0195 0.32 -2.1
239,716 - Rru_A0195 0.32 -0.8
239,802 + Rru_A0195 0.33 +0.9
239,804 + Rru_A0195 0.33 +2.0
239,804 + Rru_A0195 0.33 -1.9
239,804 + Rru_A0195 0.33 -1.2
239,804 + Rru_A0195 0.33 -1.0
239,805 - Rru_A0195 0.34 -0.6
239,805 - Rru_A0195 0.34 -1.6
239,805 - Rru_A0195 0.34 -0.1
239,872 - Rru_A0195 0.35 -2.3
239,913 + Rru_A0195 0.35 +0.7
239,916 + Rru_A0195 0.35 +1.1
239,917 - Rru_A0195 0.35 +0.4
239,917 - Rru_A0195 0.35 -2.3
239,917 - Rru_A0195 0.35 +0.5
239,917 - Rru_A0195 0.35 +0.8
239,917 - Rru_A0195 0.35 +0.4
240,064 - Rru_A0195 0.38 +0.2
240,064 - Rru_A0195 0.38 -1.7
240,064 - Rru_A0195 0.38 -0.4
240,073 - Rru_A0195 0.38 +0.5
240,207 + Rru_A0195 0.40 +0.7
240,207 + Rru_A0195 0.40 -3.6
240,207 + Rru_A0195 0.40 -4.6
240,207 + Rru_A0195 0.40 -0.2
240,207 + Rru_A0195 0.40 -0.2
240,207 + Rru_A0195 0.40 +1.2
240,208 - Rru_A0195 0.40 -4.4
240,208 - Rru_A0195 0.40 +0.2
240,208 - Rru_A0195 0.40 -1.9
240,208 - Rru_A0195 0.40 -3.3
240,208 - Rru_A0195 0.40 +0.0
240,208 - Rru_A0195 0.40 -2.3
240,208 - Rru_A0195 0.40 -0.2
240,590 + Rru_A0195 0.47 -1.0
240,591 - Rru_A0195 0.47 +1.5
240,735 + Rru_A0195 0.50 +0.4
240,735 + Rru_A0195 0.50 -0.4
240,736 - Rru_A0195 0.50 -3.8
240,736 - Rru_A0195 0.50 +0.1
240,741 + Rru_A0195 0.50 +0.0
240,741 + Rru_A0195 0.50 +0.3
240,741 + Rru_A0195 0.50 -1.2
240,741 + Rru_A0195 0.50 -3.2
240,742 - Rru_A0195 0.50 -1.5
240,742 - Rru_A0195 0.50 -0.2
240,742 - Rru_A0195 0.50 +0.7
240,742 - Rru_A0195 0.50 -2.1
240,742 - Rru_A0195 0.50 -1.4
240,924 - Rru_A0195 0.53 -1.3
240,969 + Rru_A0195 0.54 +1.2
240,969 + Rru_A0195 0.54 -1.7
240,969 + Rru_A0195 0.54 +1.1
240,969 + Rru_A0195 0.54 +0.4
240,970 - Rru_A0195 0.54 +0.3
240,970 - Rru_A0195 0.54 +0.5
240,970 - Rru_A0195 0.54 -3.0
240,970 - Rru_A0195 0.54 +2.8
240,970 - Rru_A0195 0.54 +1.1
240,970 - Rru_A0195 0.54 -2.1
241,089 + Rru_A0195 0.56 -3.0
241,089 + Rru_A0195 0.56 +0.4
241,089 + Rru_A0195 0.56 -0.4
241,140 + Rru_A0195 0.57 +1.0
241,140 + Rru_A0195 0.57 -4.2
241,141 - Rru_A0195 0.57 -0.8
241,141 - Rru_A0195 0.57 -1.7
241,141 - Rru_A0195 0.57 -2.0
241,146 + Rru_A0195 0.57 +0.0
241,151 + Rru_A0195 0.57 -0.5
241,151 + Rru_A0195 0.57 +0.8
241,152 - Rru_A0195 0.57 -2.1
241,152 - Rru_A0195 0.57 -0.2
241,152 - Rru_A0195 0.57 -0.5
241,152 - Rru_A0195 0.57 +1.4
241,152 - Rru_A0195 0.57 -1.1
241,315 - Rru_A0195 0.60 -1.8
241,315 - Rru_A0195 0.60 +0.2
241,317 - Rru_A0195 0.60 -0.0
241,329 + Rru_A0195 0.60 -0.3
241,330 - Rru_A0195 0.60 -0.6
241,330 - Rru_A0195 0.60 -3.5
241,467 + Rru_A0195 0.62 +0.9
241,468 - Rru_A0195 0.62 -0.9
241,468 - Rru_A0195 0.62 -2.6
241,468 - Rru_A0195 0.62 +1.4
241,542 + Rru_A0195 0.64 +1.2
241,543 - Rru_A0195 0.64 +1.6
241,596 + Rru_A0195 0.65 -0.8
241,596 + Rru_A0195 0.65 -2.5
241,596 + Rru_A0195 0.65 +0.4
241,597 - Rru_A0195 0.65 -0.2
241,597 - Rru_A0195 0.65 +0.9
241,597 - Rru_A0195 0.65 +1.1
241,599 + Rru_A0195 0.65 -3.3
241,599 + Rru_A0195 0.65 -0.5
241,599 + Rru_A0195 0.65 -1.7
241,944 + Rru_A0195 0.71 -0.9
241,944 + Rru_A0195 0.71 +0.1
241,944 + Rru_A0195 0.71 -3.5
241,944 + Rru_A0195 0.71 -2.2
241,945 - Rru_A0195 0.71 +0.5
241,945 - Rru_A0195 0.71 +0.8
241,945 - Rru_A0195 0.71 -0.8
242,034 - Rru_A0195 0.72 +0.5
242,085 + Rru_A0195 0.73 +0.2
242,086 - Rru_A0195 0.73 -4.7
242,113 - Rru_A0195 0.73 +0.4
242,113 - Rru_A0195 0.73 -0.7
242,311 - Rru_A0195 0.77 -3.9
242,311 - Rru_A0195 0.77 +1.2
242,334 + Rru_A0195 0.77 +0.0
242,335 - Rru_A0195 0.77 -1.5
242,335 - Rru_A0195 0.77 +0.3
242,335 - Rru_A0195 0.77 +0.1
242,335 - Rru_A0195 0.77 -0.3
242,335 - Rru_A0195 0.77 +1.1
242,488 + Rru_A0195 0.80 -2.8
242,488 + Rru_A0195 0.80 +2.4
242,514 + Rru_A0195 0.80 -1.2
242,515 - Rru_A0195 0.80 -0.9
242,515 - Rru_A0195 0.80 +0.5
242,673 + Rru_A0195 0.83 -0.5
242,673 + Rru_A0195 0.83 -0.1
242,674 - Rru_A0195 0.83 +1.7
242,674 - Rru_A0195 0.83 +1.4
242,674 - Rru_A0195 0.83 -1.2
242,675 + Rru_A0195 0.83 +1.0
242,781 - Rru_A0195 0.85 -1.1
242,988 + Rru_A0195 0.89 +1.1
242,988 + Rru_A0195 0.89 +0.4
242,988 + Rru_A0195 0.89 +0.8
242,989 - Rru_A0195 0.89 +1.2
242,989 - Rru_A0195 0.89 -0.2
242,989 - Rru_A0195 0.89 +1.0
242,989 - Rru_A0195 0.89 +0.2
242,989 - Rru_A0195 0.89 +0.3
243,009 + Rru_A0195 0.89 -1.1
243,324 + +0.3
243,325 - -4.4
243,326 + -2.4
243,354 + -0.4
243,355 - -0.3
243,355 - -3.2
243,477 + -0.5
243,516 + +1.2
243,516 + -0.2
243,516 + +0.3
243,517 - +0.9
243,517 - -1.2
243,517 - -1.1
243,517 - +0.2
243,517 - +0.3
243,517 - -1.8
243,518 + +1.0
243,519 - +0.9
243,519 - +0.2
243,519 - -0.7

Or see this region's nucleotide sequence