Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0184

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0183 and Rru_A0184 overlap by 1 nucleotidesRru_A0184 and Rru_A0185 overlap by 4 nucleotides Rru_A0183: Rru_A0183 - Cold-shock DNA-binding domain protein (NCBI), at 217,785 to 220,433 _A0183 Rru_A0184: Rru_A0184 - Protein of unknown function DUF324 (NCBI), at 220,433 to 222,079 _A0184 Rru_A0185: Rru_A0185 - hypothetical protein (NCBI), at 222,076 to 224,034 _A0185 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 219.445 kb on - strand, within Rru_A0183at 219.486 kb on - strand, within Rru_A0183at 219.632 kb on + strand, within Rru_A0183at 219.633 kb on - strand, within Rru_A0183at 219.633 kb on - strand, within Rru_A0183at 219.634 kb on + strand, within Rru_A0183at 219.634 kb on + strand, within Rru_A0183at 219.675 kb on + strand, within Rru_A0183at 219.676 kb on - strand, within Rru_A0183at 219.688 kb on + strand, within Rru_A0183at 219.688 kb on + strand, within Rru_A0183at 219.688 kb on + strand, within Rru_A0183at 219.689 kb on - strand, within Rru_A0183at 219.689 kb on - strand, within Rru_A0183at 219.689 kb on - strand, within Rru_A0183at 219.689 kb on - strand, within Rru_A0183at 219.712 kb on + strand, within Rru_A0183at 219.713 kb on - strand, within Rru_A0183at 219.713 kb on - strand, within Rru_A0183at 219.851 kb on + strand, within Rru_A0183at 219.852 kb on - strand, within Rru_A0183at 219.852 kb on - strand, within Rru_A0183at 219.857 kb on + strand, within Rru_A0183at 219.858 kb on - strand, within Rru_A0183at 219.922 kb on - strand, within Rru_A0183at 219.928 kb on - strand, within Rru_A0183at 220.031 kb on + strand, within Rru_A0183at 220.159 kb on + strand, within Rru_A0183at 220.159 kb on + strand, within Rru_A0183at 220.159 kb on + strand, within Rru_A0183at 220.160 kb on - strand, within Rru_A0183at 220.160 kb on - strand, within Rru_A0183at 220.160 kb on - strand, within Rru_A0183at 220.160 kb on - strand, within Rru_A0183at 220.160 kb on - strand, within Rru_A0183at 220.298 kb on + strandat 220.299 kb on - strandat 220.408 kb on + strandat 220.408 kb on + strandat 220.408 kb on + strandat 220.409 kb on - strandat 220.409 kb on - strandat 220.409 kb on - strandat 220.409 kb on - strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.412 kb on + strandat 220.413 kb on - strandat 220.413 kb on - strandat 220.455 kb on + strandat 220.455 kb on + strandat 220.456 kb on - strandat 220.456 kb on - strandat 220.638 kb on + strand, within Rru_A0184at 220.721 kb on + strand, within Rru_A0184at 220.722 kb on - strand, within Rru_A0184at 220.722 kb on - strand, within Rru_A0184at 220.792 kb on - strand, within Rru_A0184at 220.792 kb on - strand, within Rru_A0184at 220.792 kb on - strand, within Rru_A0184at 220.862 kb on - strand, within Rru_A0184at 221.231 kb on + strand, within Rru_A0184at 221.231 kb on + strand, within Rru_A0184at 221.232 kb on - strand, within Rru_A0184at 221.607 kb on + strand, within Rru_A0184at 221.607 kb on + strand, within Rru_A0184at 221.607 kb on + strand, within Rru_A0184at 221.608 kb on - strand, within Rru_A0184at 221.841 kb on + strand, within Rru_A0184at 221.841 kb on + strand, within Rru_A0184at 221.842 kb on - strand, within Rru_A0184at 222.104 kb on - strandat 222.104 kb on - strandat 222.104 kb on - strandat 222.272 kb on - strand, within Rru_A0185at 222.299 kb on + strand, within Rru_A0185at 222.398 kb on + strand, within Rru_A0185at 222.398 kb on + strand, within Rru_A0185at 222.398 kb on + strand, within Rru_A0185at 222.399 kb on - strand, within Rru_A0185at 222.399 kb on - strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.402 kb on + strand, within Rru_A0185at 222.652 kb on + strand, within Rru_A0185at 222.906 kb on + strand, within Rru_A0185

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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219,445 - Rru_A0183 0.63 -1.7
219,486 - Rru_A0183 0.64 -2.5
219,632 + Rru_A0183 0.70 +0.5
219,633 - Rru_A0183 0.70 -0.5
219,633 - Rru_A0183 0.70 +0.7
219,634 + Rru_A0183 0.70 -0.1
219,634 + Rru_A0183 0.70 +0.1
219,675 + Rru_A0183 0.71 +1.2
219,676 - Rru_A0183 0.71 +1.3
219,688 + Rru_A0183 0.72 +0.1
219,688 + Rru_A0183 0.72 -0.4
219,688 + Rru_A0183 0.72 -1.0
219,689 - Rru_A0183 0.72 -1.2
219,689 - Rru_A0183 0.72 +1.9
219,689 - Rru_A0183 0.72 +0.6
219,689 - Rru_A0183 0.72 -0.4
219,712 + Rru_A0183 0.73 -1.0
219,713 - Rru_A0183 0.73 +1.2
219,713 - Rru_A0183 0.73 +0.3
219,851 + Rru_A0183 0.78 -1.8
219,852 - Rru_A0183 0.78 +1.0
219,852 - Rru_A0183 0.78 -0.9
219,857 + Rru_A0183 0.78 +0.9
219,858 - Rru_A0183 0.78 +0.2
219,922 - Rru_A0183 0.81 -2.3
219,928 - Rru_A0183 0.81 -0.4
220,031 + Rru_A0183 0.85 +0.5
220,159 + Rru_A0183 0.90 +1.1
220,159 + Rru_A0183 0.90 +0.6
220,159 + Rru_A0183 0.90 -0.2
220,160 - Rru_A0183 0.90 -3.4
220,160 - Rru_A0183 0.90 -0.0
220,160 - Rru_A0183 0.90 +0.7
220,160 - Rru_A0183 0.90 +0.6
220,160 - Rru_A0183 0.90 +1.0
220,298 + +0.4
220,299 - -0.5
220,408 + -1.4
220,408 + -2.6
220,408 + -1.4
220,409 - +0.2
220,409 - +0.3
220,409 - +0.2
220,409 - +0.5
220,412 + +0.1
220,412 + +0.9
220,412 + +0.4
220,412 + +0.1
220,413 - -1.3
220,413 - +0.6
220,455 + -0.5
220,455 + -0.3
220,456 - -3.0
220,456 - -3.3
220,638 + Rru_A0184 0.12 -2.8
220,721 + Rru_A0184 0.17 -1.4
220,722 - Rru_A0184 0.18 -0.5
220,722 - Rru_A0184 0.18 -0.9
220,792 - Rru_A0184 0.22 -3.0
220,792 - Rru_A0184 0.22 -0.6
220,792 - Rru_A0184 0.22 -2.2
220,862 - Rru_A0184 0.26 -0.9
221,231 + Rru_A0184 0.48 +1.0
221,231 + Rru_A0184 0.48 +0.1
221,232 - Rru_A0184 0.49 +0.2
221,607 + Rru_A0184 0.71 -0.9
221,607 + Rru_A0184 0.71 -3.8
221,607 + Rru_A0184 0.71 +0.6
221,608 - Rru_A0184 0.71 +0.2
221,841 + Rru_A0184 0.85 -1.9
221,841 + Rru_A0184 0.85 +1.6
221,842 - Rru_A0184 0.86 +1.2
222,104 - -0.1
222,104 - -0.5
222,104 - -3.4
222,272 - Rru_A0185 0.10 +4.6
222,299 + Rru_A0185 0.11 +0.9
222,398 + Rru_A0185 0.16 +0.6
222,398 + Rru_A0185 0.16 -1.6
222,398 + Rru_A0185 0.16 +0.8
222,399 - Rru_A0185 0.16 -0.0
222,399 - Rru_A0185 0.16 +1.0
222,402 + Rru_A0185 0.17 -1.2
222,402 + Rru_A0185 0.17 +0.1
222,402 + Rru_A0185 0.17 +0.5
222,402 + Rru_A0185 0.17 +1.1
222,402 + Rru_A0185 0.17 -1.9
222,402 + Rru_A0185 0.17 +1.0
222,402 + Rru_A0185 0.17 -0.6
222,402 + Rru_A0185 0.17 -1.4
222,652 + Rru_A0185 0.29 -0.5
222,906 + Rru_A0185 0.42 +0.5

Or see this region's nucleotide sequence