Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0141 and Rru_A0142 are separated by 323 nucleotides Rru_A0142 and Rru_A0143 are separated by 78 nucleotides Rru_A0143 and Rru_A0144 overlap by 14 nucleotides
Rru_A0141: Rru_A0141 - Porphobilinogen synthase (NCBI), at 164,512 to 165,495
_A0141
Rru_A0142: Rru_A0142 - Putative cyclase (NCBI), at 165,819 to 166,781
_A0142
Rru_A0143: Rru_A0143 - GCN5-related N-acetyltransferase (NCBI), at 166,860 to 167,525
_A0143
Rru_A0144: Rru_A0144 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 167,512 to 168,615
_A0144
Position (kb) 165
166
167 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 164.834 kb on + strand, within Rru_A0141 at 164.834 kb on + strand, within Rru_A0141 at 164.834 kb on + strand, within Rru_A0141 at 164.835 kb on - strand, within Rru_A0141 at 164.835 kb on - strand, within Rru_A0141 at 164.835 kb on - strand, within Rru_A0141 at 164.872 kb on + strand, within Rru_A0141 at 164.916 kb on - strand, within Rru_A0141 at 164.922 kb on + strand, within Rru_A0141 at 165.182 kb on - strand, within Rru_A0141 at 165.495 kb on + strand at 165.495 kb on + strand at 165.495 kb on + strand at 165.495 kb on + strand at 165.496 kb on - strand at 165.496 kb on - strand at 165.538 kb on + strand at 165.538 kb on + strand at 165.539 kb on - strand at 165.605 kb on - strand at 165.634 kb on + strand at 165.634 kb on + strand at 165.634 kb on + strand at 165.634 kb on + strand at 165.635 kb on - strand at 165.946 kb on + strand, within Rru_A0142 at 165.946 kb on + strand, within Rru_A0142 at 165.946 kb on + strand, within Rru_A0142 at 165.947 kb on - strand, within Rru_A0142 at 165.947 kb on - strand, within Rru_A0142 at 166.106 kb on + strand, within Rru_A0142 at 166.107 kb on - strand, within Rru_A0142 at 166.318 kb on + strand, within Rru_A0142 at 166.319 kb on - strand, within Rru_A0142 at 166.319 kb on - strand, within Rru_A0142 at 166.378 kb on + strand, within Rru_A0142 at 166.378 kb on + strand, within Rru_A0142 at 166.378 kb on + strand, within Rru_A0142 at 166.378 kb on + strand, within Rru_A0142 at 166.378 kb on + strand, within Rru_A0142 at 166.378 kb on + strand, within Rru_A0142 at 166.378 kb on + strand, within Rru_A0142 at 166.378 kb on + strand, within Rru_A0142 at 166.378 kb on + strand, within Rru_A0142 at 166.379 kb on - strand, within Rru_A0142 at 166.379 kb on - strand, within Rru_A0142 at 166.379 kb on - strand, within Rru_A0142 at 166.379 kb on - strand, within Rru_A0142 at 166.379 kb on - strand, within Rru_A0142 at 166.471 kb on + strand, within Rru_A0142 at 166.471 kb on + strand, within Rru_A0142 at 166.471 kb on + strand, within Rru_A0142 at 166.471 kb on + strand, within Rru_A0142 at 166.471 kb on + strand, within Rru_A0142 at 166.472 kb on - strand, within Rru_A0142 at 166.472 kb on - strand, within Rru_A0142 at 166.472 kb on - strand, within Rru_A0142 at 166.472 kb on - strand, within Rru_A0142 at 166.472 kb on - strand, within Rru_A0142 at 166.472 kb on - strand, within Rru_A0142 at 166.499 kb on + strand, within Rru_A0142 at 166.501 kb on + strand, within Rru_A0142 at 166.501 kb on + strand, within Rru_A0142 at 166.501 kb on + strand, within Rru_A0142 at 166.502 kb on - strand, within Rru_A0142 at 166.502 kb on - strand, within Rru_A0142 at 166.502 kb on - strand, within Rru_A0142 at 166.502 kb on - strand, within Rru_A0142 at 166.529 kb on - strand, within Rru_A0142 at 166.630 kb on + strand, within Rru_A0142 at 166.630 kb on + strand, within Rru_A0142 at 166.630 kb on + strand, within Rru_A0142 at 166.631 kb on - strand, within Rru_A0142 at 166.631 kb on - strand, within Rru_A0142 at 166.825 kb on + strand at 166.826 kb on - strand at 166.826 kb on - strand at 166.827 kb on + strand at 166.828 kb on - strand at 166.828 kb on - strand at 166.828 kb on - strand at 166.828 kb on - strand at 166.878 kb on + strand at 166.879 kb on - strand at 166.945 kb on - strand, within Rru_A0143 at 166.945 kb on - strand, within Rru_A0143 at 166.945 kb on - strand, within Rru_A0143 at 166.945 kb on - strand, within Rru_A0143 at 166.945 kb on - strand, within Rru_A0143 at 166.945 kb on - strand, within Rru_A0143 at 167.009 kb on + strand, within Rru_A0143 at 167.009 kb on + strand, within Rru_A0143 at 167.009 kb on + strand, within Rru_A0143 at 167.010 kb on - strand, within Rru_A0143 at 167.010 kb on - strand, within Rru_A0143 at 167.148 kb on + strand, within Rru_A0143 at 167.148 kb on + strand, within Rru_A0143 at 167.148 kb on + strand, within Rru_A0143 at 167.148 kb on + strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.149 kb on - strand, within Rru_A0143 at 167.153 kb on + strand, within Rru_A0143 at 167.154 kb on - strand, within Rru_A0143 at 167.200 kb on + strand, within Rru_A0143 at 167.513 kb on + strand at 167.561 kb on + strand at 167.561 kb on + strand at 167.562 kb on - strand at 167.562 kb on - strand at 167.627 kb on + strand, within Rru_A0144 at 167.627 kb on + strand, within Rru_A0144 at 167.628 kb on - strand, within Rru_A0144 at 167.628 kb on - strand, within Rru_A0144
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 164,834 + Rru_A0141 0.33 +1.1 164,834 + Rru_A0141 0.33 -1.8 164,834 + Rru_A0141 0.33 -0.2 164,835 - Rru_A0141 0.33 +0.4 164,835 - Rru_A0141 0.33 -0.8 164,835 - Rru_A0141 0.33 +1.2 164,872 + Rru_A0141 0.37 +1.2 164,916 - Rru_A0141 0.41 -2.9 164,922 + Rru_A0141 0.42 -3.5 165,182 - Rru_A0141 0.68 -0.9 165,495 + +0.7 165,495 + -4.2 165,495 + +1.1 165,495 + +0.2 165,496 - +0.1 165,496 - -1.7 165,538 + +0.8 165,538 + +0.6 165,539 - -2.3 165,605 - -1.7 165,634 + -1.1 165,634 + -1.3 165,634 + -2.3 165,634 + +0.4 165,635 - -1.4 165,946 + Rru_A0142 0.13 -3.6 165,946 + Rru_A0142 0.13 +0.8 165,946 + Rru_A0142 0.13 +1.3 165,947 - Rru_A0142 0.13 -0.8 165,947 - Rru_A0142 0.13 -3.2 166,106 + Rru_A0142 0.30 +0.3 166,107 - Rru_A0142 0.30 -0.2 166,318 + Rru_A0142 0.52 -2.0 166,319 - Rru_A0142 0.52 +0.1 166,319 - Rru_A0142 0.52 -1.9 166,378 + Rru_A0142 0.58 +0.0 166,378 + Rru_A0142 0.58 +1.1 166,378 + Rru_A0142 0.58 +0.7 166,378 + Rru_A0142 0.58 +0.1 166,378 + Rru_A0142 0.58 +0.4 166,378 + Rru_A0142 0.58 -2.2 166,378 + Rru_A0142 0.58 -1.6 166,378 + Rru_A0142 0.58 +1.1 166,378 + Rru_A0142 0.58 +0.5 166,379 - Rru_A0142 0.58 +0.4 166,379 - Rru_A0142 0.58 -0.5 166,379 - Rru_A0142 0.58 +0.2 166,379 - Rru_A0142 0.58 -4.1 166,379 - Rru_A0142 0.58 +1.3 166,471 + Rru_A0142 0.68 +1.1 166,471 + Rru_A0142 0.68 -0.5 166,471 + Rru_A0142 0.68 +0.8 166,471 + Rru_A0142 0.68 -4.5 166,471 + Rru_A0142 0.68 -0.3 166,472 - Rru_A0142 0.68 +0.3 166,472 - Rru_A0142 0.68 -2.5 166,472 - Rru_A0142 0.68 -0.2 166,472 - Rru_A0142 0.68 -1.1 166,472 - Rru_A0142 0.68 -3.1 166,472 - Rru_A0142 0.68 -0.5 166,499 + Rru_A0142 0.71 -0.4 166,501 + Rru_A0142 0.71 -2.1 166,501 + Rru_A0142 0.71 -3.5 166,501 + Rru_A0142 0.71 -1.5 166,502 - Rru_A0142 0.71 -3.0 166,502 - Rru_A0142 0.71 -1.6 166,502 - Rru_A0142 0.71 +0.3 166,502 - Rru_A0142 0.71 -4.2 166,529 - Rru_A0142 0.74 -0.3 166,630 + Rru_A0142 0.84 -2.3 166,630 + Rru_A0142 0.84 +1.9 166,630 + Rru_A0142 0.84 +0.7 166,631 - Rru_A0142 0.84 +0.8 166,631 - Rru_A0142 0.84 +0.3 166,825 + -0.1 166,826 - -3.4 166,826 - -4.4 166,827 + +0.2 166,828 - -4.1 166,828 - +0.6 166,828 - +0.5 166,828 - +0.3 166,878 + -2.9 166,879 - -1.7 166,945 - Rru_A0143 0.13 -2.0 166,945 - Rru_A0143 0.13 -3.0 166,945 - Rru_A0143 0.13 +1.5 166,945 - Rru_A0143 0.13 -1.2 166,945 - Rru_A0143 0.13 +2.1 166,945 - Rru_A0143 0.13 -3.1 167,009 + Rru_A0143 0.22 -1.6 167,009 + Rru_A0143 0.22 +0.4 167,009 + Rru_A0143 0.22 +0.6 167,010 - Rru_A0143 0.23 +1.4 167,010 - Rru_A0143 0.23 +1.6 167,148 + Rru_A0143 0.43 -3.2 167,148 + Rru_A0143 0.43 -2.5 167,148 + Rru_A0143 0.43 +0.3 167,148 + Rru_A0143 0.43 -1.9 167,149 - Rru_A0143 0.43 -2.1 167,149 - Rru_A0143 0.43 +1.0 167,149 - Rru_A0143 0.43 -1.7 167,149 - Rru_A0143 0.43 -3.2 167,149 - Rru_A0143 0.43 -1.9 167,149 - Rru_A0143 0.43 -0.7 167,149 - Rru_A0143 0.43 -0.6 167,149 - Rru_A0143 0.43 -2.8 167,153 + Rru_A0143 0.44 -4.7 167,154 - Rru_A0143 0.44 +1.2 167,200 + Rru_A0143 0.51 +0.6 167,513 + -1.4 167,561 + -0.5 167,561 + +0.9 167,562 - -1.7 167,562 - +0.8 167,627 + Rru_A0144 0.10 -1.9 167,627 + Rru_A0144 0.10 -0.5 167,628 - Rru_A0144 0.11 +0.4 167,628 - Rru_A0144 0.11 +1.1
Or see this region's nucleotide sequence