Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0093

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0092 and Rru_A0093 are separated by 45 nucleotidesRru_A0093 and Rru_A0094 overlap by 4 nucleotidesRru_A0094 and Rru_A0095 are separated by 6 nucleotides Rru_A0092: Rru_A0092 - extracellular solute-binding protein, family 1 (NCBI), at 105,873 to 107,150 _A0092 Rru_A0093: Rru_A0093 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 107,196 to 108,065 _A0093 Rru_A0094: Rru_A0094 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 108,062 to 109,000 _A0094 Rru_A0095: Rru_A0095 - ABC transporter component (NCBI), at 109,007 to 110,125 _A0095 Position (kb) 107 108 109Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 106.284 kb on + strand, within Rru_A0092at 106.284 kb on + strand, within Rru_A0092at 106.285 kb on - strand, within Rru_A0092at 106.285 kb on - strand, within Rru_A0092at 106.296 kb on + strand, within Rru_A0092at 106.296 kb on + strand, within Rru_A0092at 106.296 kb on + strand, within Rru_A0092at 106.296 kb on + strand, within Rru_A0092at 106.296 kb on + strand, within Rru_A0092at 106.297 kb on - strand, within Rru_A0092at 106.297 kb on - strand, within Rru_A0092at 106.297 kb on - strand, within Rru_A0092at 106.297 kb on - strand, within Rru_A0092at 106.316 kb on + strand, within Rru_A0092at 106.317 kb on - strand, within Rru_A0092at 106.403 kb on + strand, within Rru_A0092at 106.521 kb on + strand, within Rru_A0092at 106.521 kb on + strand, within Rru_A0092at 107.269 kb on - strandat 107.292 kb on + strand, within Rru_A0093at 107.328 kb on + strand, within Rru_A0093at 107.328 kb on + strand, within Rru_A0093at 107.328 kb on + strand, within Rru_A0093at 107.353 kb on - strand, within Rru_A0093at 107.353 kb on - strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.509 kb on + strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.588 kb on + strand, within Rru_A0093at 107.588 kb on + strand, within Rru_A0093at 107.588 kb on + strand, within Rru_A0093at 107.588 kb on + strand, within Rru_A0093at 107.588 kb on + strand, within Rru_A0093at 107.589 kb on - strand, within Rru_A0093at 107.589 kb on - strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.661 kb on - strand, within Rru_A0093at 107.791 kb on - strand, within Rru_A0093at 107.910 kb on + strand, within Rru_A0093at 107.911 kb on - strand, within Rru_A0093at 107.911 kb on - strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.941 kb on - strand, within Rru_A0093at 107.941 kb on - strand, within Rru_A0093at 107.941 kb on - strand, within Rru_A0093at 108.030 kb on + strandat 108.030 kb on + strandat 108.036 kb on + strandat 108.036 kb on + strandat 108.076 kb on + strandat 108.076 kb on + strandat 108.077 kb on - strandat 108.077 kb on - strandat 108.180 kb on - strand, within Rru_A0094at 108.206 kb on + strand, within Rru_A0094at 108.210 kb on - strand, within Rru_A0094at 108.371 kb on + strand, within Rru_A0094at 108.372 kb on - strand, within Rru_A0094at 108.372 kb on - strand, within Rru_A0094at 108.443 kb on + strand, within Rru_A0094at 108.444 kb on - strand, within Rru_A0094at 108.444 kb on - strand, within Rru_A0094at 108.608 kb on + strand, within Rru_A0094at 108.609 kb on - strand, within Rru_A0094at 108.609 kb on - strand, within Rru_A0094at 108.647 kb on + strand, within Rru_A0094at 108.647 kb on + strand, within Rru_A0094at 108.648 kb on - strand, within Rru_A0094at 108.648 kb on - strand, within Rru_A0094at 108.648 kb on - strand, within Rru_A0094at 108.648 kb on - strand, within Rru_A0094at 108.648 kb on - strand, within Rru_A0094at 108.650 kb on - strand, within Rru_A0094at 108.650 kb on - strand, within Rru_A0094at 108.650 kb on - strand, within Rru_A0094at 108.785 kb on + strand, within Rru_A0094at 108.785 kb on + strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.786 kb on - strand, within Rru_A0094at 108.788 kb on - strand, within Rru_A0094at 108.853 kb on + strand, within Rru_A0094at 108.853 kb on + strand, within Rru_A0094at 108.854 kb on - strand, within Rru_A0094at 108.854 kb on - strand, within Rru_A0094at 108.854 kb on - strand, within Rru_A0094at 108.854 kb on - strand, within Rru_A0094at 108.854 kb on - strand, within Rru_A0094at 108.887 kb on + strand, within Rru_A0094at 108.887 kb on + strand, within Rru_A0094at 108.887 kb on + strand, within Rru_A0094at 108.888 kb on - strand, within Rru_A0094at 108.888 kb on - strand, within Rru_A0094at 108.888 kb on - strand, within Rru_A0094at 108.941 kb on + strandat 108.942 kb on - strandat 108.959 kb on + strandat 108.959 kb on + strandat 108.960 kb on - strandat 108.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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106,284 + Rru_A0092 0.32 -0.5
106,284 + Rru_A0092 0.32 -2.2
106,285 - Rru_A0092 0.32 -0.2
106,285 - Rru_A0092 0.32 +1.0
106,296 + Rru_A0092 0.33 -0.3
106,296 + Rru_A0092 0.33 +0.4
106,296 + Rru_A0092 0.33 -0.3
106,296 + Rru_A0092 0.33 +0.4
106,296 + Rru_A0092 0.33 -3.7
106,297 - Rru_A0092 0.33 -1.6
106,297 - Rru_A0092 0.33 +2.5
106,297 - Rru_A0092 0.33 -0.8
106,297 - Rru_A0092 0.33 -0.3
106,316 + Rru_A0092 0.35 +0.9
106,317 - Rru_A0092 0.35 -0.1
106,403 + Rru_A0092 0.41 -0.9
106,521 + Rru_A0092 0.51 -2.6
106,521 + Rru_A0092 0.51 +0.9
107,269 - +0.2
107,292 + Rru_A0093 0.11 -4.0
107,328 + Rru_A0093 0.15 -2.5
107,328 + Rru_A0093 0.15 +1.8
107,328 + Rru_A0093 0.15 -3.5
107,353 - Rru_A0093 0.18 +0.7
107,353 - Rru_A0093 0.18 +0.7
107,508 + Rru_A0093 0.36 -0.2
107,508 + Rru_A0093 0.36 -0.6
107,508 + Rru_A0093 0.36 +1.7
107,508 + Rru_A0093 0.36 +0.0
107,508 + Rru_A0093 0.36 -1.2
107,508 + Rru_A0093 0.36 -1.9
107,508 + Rru_A0093 0.36 +1.8
107,508 + Rru_A0093 0.36 +1.3
107,508 + Rru_A0093 0.36 +0.7
107,508 + Rru_A0093 0.36 -3.8
107,509 + Rru_A0093 0.36 -1.0
107,509 - Rru_A0093 0.36 -0.3
107,509 - Rru_A0093 0.36 -0.8
107,509 - Rru_A0093 0.36 -2.3
107,509 - Rru_A0093 0.36 -0.4
107,509 - Rru_A0093 0.36 +0.2
107,509 - Rru_A0093 0.36 +0.4
107,509 - Rru_A0093 0.36 -2.6
107,509 - Rru_A0093 0.36 -0.4
107,509 - Rru_A0093 0.36 +0.1
107,509 - Rru_A0093 0.36 +1.2
107,509 - Rru_A0093 0.36 -1.6
107,509 - Rru_A0093 0.36 -0.7
107,588 + Rru_A0093 0.45 -0.4
107,588 + Rru_A0093 0.45 -0.1
107,588 + Rru_A0093 0.45 +0.9
107,588 + Rru_A0093 0.45 -0.1
107,588 + Rru_A0093 0.45 -0.5
107,589 - Rru_A0093 0.45 +0.2
107,589 - Rru_A0093 0.45 -0.3
107,658 + Rru_A0093 0.53 -5.2
107,658 + Rru_A0093 0.53 -2.6
107,658 + Rru_A0093 0.53 -1.0
107,658 + Rru_A0093 0.53 -1.1
107,658 + Rru_A0093 0.53 -0.3
107,658 + Rru_A0093 0.53 +0.9
107,658 + Rru_A0093 0.53 -1.3
107,659 - Rru_A0093 0.53 -4.4
107,659 - Rru_A0093 0.53 +0.1
107,659 - Rru_A0093 0.53 -0.6
107,659 - Rru_A0093 0.53 +0.7
107,659 - Rru_A0093 0.53 -2.3
107,659 - Rru_A0093 0.53 -3.2
107,661 - Rru_A0093 0.53 +0.4
107,791 - Rru_A0093 0.68 +0.1
107,910 + Rru_A0093 0.82 +0.1
107,911 - Rru_A0093 0.82 -1.8
107,911 - Rru_A0093 0.82 -2.5
107,940 + Rru_A0093 0.86 +1.2
107,940 + Rru_A0093 0.86 -2.0
107,940 + Rru_A0093 0.86 -3.4
107,940 + Rru_A0093 0.86 +1.0
107,940 + Rru_A0093 0.86 -0.0
107,940 + Rru_A0093 0.86 -0.8
107,940 + Rru_A0093 0.86 +0.9
107,941 - Rru_A0093 0.86 -2.7
107,941 - Rru_A0093 0.86 +0.2
107,941 - Rru_A0093 0.86 -0.4
108,030 + -2.6
108,030 + -1.2
108,036 + -0.1
108,036 + +1.3
108,076 + +1.7
108,076 + +1.0
108,077 - +0.3
108,077 - -0.3
108,180 - Rru_A0094 0.13 +0.0
108,206 + Rru_A0094 0.15 +1.0
108,210 - Rru_A0094 0.16 +0.9
108,371 + Rru_A0094 0.33 +0.0
108,372 - Rru_A0094 0.33 -0.4
108,372 - Rru_A0094 0.33 +0.8
108,443 + Rru_A0094 0.41 +2.1
108,444 - Rru_A0094 0.41 +0.2
108,444 - Rru_A0094 0.41 +0.2
108,608 + Rru_A0094 0.58 +0.0
108,609 - Rru_A0094 0.58 -0.1
108,609 - Rru_A0094 0.58 -1.3
108,647 + Rru_A0094 0.62 -3.9
108,647 + Rru_A0094 0.62 -0.1
108,648 - Rru_A0094 0.62 -3.0
108,648 - Rru_A0094 0.62 +1.4
108,648 - Rru_A0094 0.62 -2.9
108,648 - Rru_A0094 0.62 +1.2
108,648 - Rru_A0094 0.62 -0.6
108,650 - Rru_A0094 0.63 +1.0
108,650 - Rru_A0094 0.63 +1.8
108,650 - Rru_A0094 0.63 +1.6
108,785 + Rru_A0094 0.77 +1.7
108,785 + Rru_A0094 0.77 +0.6
108,786 - Rru_A0094 0.77 -1.0
108,786 - Rru_A0094 0.77 +0.3
108,786 - Rru_A0094 0.77 +1.4
108,786 - Rru_A0094 0.77 +2.8
108,786 - Rru_A0094 0.77 +0.6
108,786 - Rru_A0094 0.77 +0.4
108,786 - Rru_A0094 0.77 -0.8
108,786 - Rru_A0094 0.77 +1.0
108,786 - Rru_A0094 0.77 +1.5
108,786 - Rru_A0094 0.77 +0.6
108,786 - Rru_A0094 0.77 +0.6
108,788 - Rru_A0094 0.77 +0.1
108,853 + Rru_A0094 0.84 -0.2
108,853 + Rru_A0094 0.84 -0.4
108,854 - Rru_A0094 0.84 -1.0
108,854 - Rru_A0094 0.84 +1.3
108,854 - Rru_A0094 0.84 -4.5
108,854 - Rru_A0094 0.84 -0.3
108,854 - Rru_A0094 0.84 +0.2
108,887 + Rru_A0094 0.88 +0.4
108,887 + Rru_A0094 0.88 +0.9
108,887 + Rru_A0094 0.88 -0.2
108,888 - Rru_A0094 0.88 +0.8
108,888 - Rru_A0094 0.88 -2.3
108,888 - Rru_A0094 0.88 +2.0
108,941 + +0.0
108,942 - +2.4
108,959 + +0.2
108,959 + +0.7
108,960 - +1.1
108,960 - -4.6

Or see this region's nucleotide sequence