Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0025

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_B0024 and Rru_B0025 are separated by 136 nucleotidesRru_B0025 and Rru_B0026 are separated by 338 nucleotides Rru_B0024: Rru_B0024 - RepA-related protein (NCBI), at 22,802 to 23,734 _B0024 Rru_B0025: Rru_B0025 - hypothetical protein (NCBI), at 23,871 to 24,122 _B0025 Rru_B0026: Rru_B0026 - SapC (NCBI), at 24,461 to 25,255 _B0026 Position (kb) 23 24 25Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 22.884 kb on + strandat 22.885 kb on - strandat 23.043 kb on - strand, within Rru_B0024at 23.116 kb on + strand, within Rru_B0024at 23.117 kb on - strand, within Rru_B0024at 23.117 kb on - strand, within Rru_B0024at 23.118 kb on + strand, within Rru_B0024at 23.118 kb on + strand, within Rru_B0024at 23.119 kb on - strand, within Rru_B0024at 23.119 kb on - strand, within Rru_B0024at 23.148 kb on + strand, within Rru_B0024at 23.149 kb on - strand, within Rru_B0024at 23.184 kb on + strand, within Rru_B0024at 23.184 kb on + strand, within Rru_B0024at 23.184 kb on + strand, within Rru_B0024at 23.272 kb on + strand, within Rru_B0024at 23.272 kb on + strand, within Rru_B0024at 23.273 kb on - strand, within Rru_B0024at 23.321 kb on + strand, within Rru_B0024at 23.321 kb on + strand, within Rru_B0024at 23.321 kb on + strand, within Rru_B0024at 23.321 kb on + strand, within Rru_B0024at 23.321 kb on + strand, within Rru_B0024at 23.321 kb on + strand, within Rru_B0024at 23.322 kb on - strand, within Rru_B0024at 23.356 kb on + strand, within Rru_B0024at 23.357 kb on - strand, within Rru_B0024at 23.425 kb on + strand, within Rru_B0024at 23.426 kb on - strand, within Rru_B0024at 23.432 kb on + strand, within Rru_B0024at 23.454 kb on + strand, within Rru_B0024at 23.454 kb on + strand, within Rru_B0024at 23.454 kb on + strand, within Rru_B0024at 23.454 kb on + strand, within Rru_B0024at 23.454 kb on + strand, within Rru_B0024at 23.455 kb on - strand, within Rru_B0024at 23.455 kb on - strand, within Rru_B0024at 23.455 kb on - strand, within Rru_B0024at 23.455 kb on - strand, within Rru_B0024at 23.455 kb on - strand, within Rru_B0024at 23.455 kb on - strand, within Rru_B0024at 23.455 kb on - strand, within Rru_B0024at 23.474 kb on - strand, within Rru_B0024at 23.502 kb on + strand, within Rru_B0024at 23.503 kb on - strand, within Rru_B0024at 23.503 kb on - strand, within Rru_B0024at 23.689 kb on + strandat 23.801 kb on + strandat 23.801 kb on + strandat 23.801 kb on + strandat 23.824 kb on + strandat 23.825 kb on - strandat 23.828 kb on + strandat 23.828 kb on + strandat 23.828 kb on + strandat 23.829 kb on - strandat 23.829 kb on - strandat 23.872 kb on + strandat 23.872 kb on + strandat 23.873 kb on - strandat 23.873 kb on - strandat 23.886 kb on + strandat 23.972 kb on + strand, within Rru_B0025at 23.973 kb on - strand, within Rru_B0025at 23.974 kb on + strand, within Rru_B0025at 23.974 kb on + strand, within Rru_B0025at 23.974 kb on + strand, within Rru_B0025at 23.975 kb on - strand, within Rru_B0025at 24.022 kb on - strand, within Rru_B0025at 24.022 kb on - strand, within Rru_B0025at 24.022 kb on - strand, within Rru_B0025at 24.022 kb on - strand, within Rru_B0025at 24.095 kb on + strand, within Rru_B0025at 24.209 kb on - strandat 24.249 kb on + strandat 24.251 kb on + strandat 24.251 kb on + strandat 24.252 kb on - strandat 24.252 kb on - strandat 24.252 kb on - strandat 24.331 kb on + strandat 24.331 kb on + strandat 24.331 kb on + strandat 24.331 kb on + strandat 24.332 kb on - strandat 24.332 kb on - strandat 24.332 kb on - strandat 24.332 kb on - strandat 24.332 kb on - strandat 24.332 kb on - strandat 24.333 kb on + strandat 24.333 kb on + strandat 24.333 kb on + strandat 24.333 kb on + strandat 24.333 kb on + strandat 24.334 kb on - strandat 24.334 kb on - strandat 24.334 kb on - strandat 24.334 kb on - strandat 24.334 kb on - strandat 24.334 kb on - strandat 24.334 kb on - strandat 24.375 kb on + strandat 24.375 kb on + strandat 24.375 kb on + strandat 24.375 kb on + strandat 24.376 kb on - strandat 24.422 kb on + strandat 24.422 kb on + strandat 24.423 kb on - strandat 24.423 kb on - strandat 24.452 kb on + strandat 24.452 kb on + strandat 24.452 kb on + strandat 24.452 kb on + strandat 24.452 kb on + strandat 24.453 kb on - strandat 24.453 kb on - strandat 24.453 kb on - strandat 24.453 kb on - strandat 24.453 kb on - strandat 24.453 kb on - strandat 24.453 kb on - strandat 24.453 kb on - strandat 24.453 kb on - strandat 24.453 kb on - strandat 24.453 kb on - strandat 24.530 kb on + strandat 24.531 kb on - strandat 24.589 kb on + strand, within Rru_B0026at 24.669 kb on + strand, within Rru_B0026at 24.670 kb on - strand, within Rru_B0026at 24.722 kb on + strand, within Rru_B0026at 24.723 kb on - strand, within Rru_B0026at 24.723 kb on - strand, within Rru_B0026at 24.723 kb on - strand, within Rru_B0026at 24.724 kb on + strand, within Rru_B0026at 24.724 kb on + strand, within Rru_B0026at 24.724 kb on + strand, within Rru_B0026at 24.724 kb on + strand, within Rru_B0026at 24.724 kb on + strand, within Rru_B0026at 24.725 kb on - strand, within Rru_B0026at 24.725 kb on - strand, within Rru_B0026at 24.725 kb on - strand, within Rru_B0026at 24.725 kb on - strand, within Rru_B0026at 24.725 kb on - strand, within Rru_B0026at 24.725 kb on - strand, within Rru_B0026at 24.725 kb on - strand, within Rru_B0026at 24.725 kb on - strand, within Rru_B0026at 24.725 kb on - strand, within Rru_B0026at 24.746 kb on + strand, within Rru_B0026at 24.746 kb on + strand, within Rru_B0026at 24.917 kb on - strand, within Rru_B0026at 24.917 kb on - strand, within Rru_B0026at 24.917 kb on - strand, within Rru_B0026at 25.050 kb on + strand, within Rru_B0026

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
22,884 + +0.1
22,885 - +0.3
23,043 - Rru_B0024 0.26 +1.0
23,116 + Rru_B0024 0.34 -3.5
23,117 - Rru_B0024 0.34 -0.9
23,117 - Rru_B0024 0.34 -4.5
23,118 + Rru_B0024 0.34 +1.2
23,118 + Rru_B0024 0.34 -0.9
23,119 - Rru_B0024 0.34 +0.8
23,119 - Rru_B0024 0.34 +0.1
23,148 + Rru_B0024 0.37 -0.8
23,149 - Rru_B0024 0.37 -5.6
23,184 + Rru_B0024 0.41 +0.6
23,184 + Rru_B0024 0.41 +0.7
23,184 + Rru_B0024 0.41 +0.8
23,272 + Rru_B0024 0.50 -1.7
23,272 + Rru_B0024 0.50 +2.5
23,273 - Rru_B0024 0.50 -0.6
23,321 + Rru_B0024 0.56 -0.4
23,321 + Rru_B0024 0.56 -3.1
23,321 + Rru_B0024 0.56 -4.0
23,321 + Rru_B0024 0.56 +1.4
23,321 + Rru_B0024 0.56 -1.5
23,321 + Rru_B0024 0.56 +0.7
23,322 - Rru_B0024 0.56 +0.3
23,356 + Rru_B0024 0.59 -3.4
23,357 - Rru_B0024 0.59 +1.3
23,425 + Rru_B0024 0.67 +0.4
23,426 - Rru_B0024 0.67 -2.0
23,432 + Rru_B0024 0.68 -1.4
23,454 + Rru_B0024 0.70 -1.2
23,454 + Rru_B0024 0.70 -4.3
23,454 + Rru_B0024 0.70 +1.7
23,454 + Rru_B0024 0.70 -1.4
23,454 + Rru_B0024 0.70 +0.6
23,455 - Rru_B0024 0.70 -0.4
23,455 - Rru_B0024 0.70 -3.6
23,455 - Rru_B0024 0.70 +0.8
23,455 - Rru_B0024 0.70 +1.6
23,455 - Rru_B0024 0.70 +1.8
23,455 - Rru_B0024 0.70 -1.2
23,455 - Rru_B0024 0.70 -1.5
23,474 - Rru_B0024 0.72 +1.0
23,502 + Rru_B0024 0.75 -0.6
23,503 - Rru_B0024 0.75 -2.7
23,503 - Rru_B0024 0.75 +0.5
23,689 + -1.7
23,801 + +0.5
23,801 + -1.7
23,801 + -3.4
23,824 + -0.3
23,825 - +1.6
23,828 + +0.2
23,828 + -0.1
23,828 + -2.1
23,829 - -3.6
23,829 - -2.7
23,872 + +0.3
23,872 + -2.8
23,873 - -3.0
23,873 - -1.1
23,886 + -0.9
23,972 + Rru_B0025 0.40 +0.8
23,973 - Rru_B0025 0.40 +2.1
23,974 + Rru_B0025 0.41 -4.7
23,974 + Rru_B0025 0.41 -1.6
23,974 + Rru_B0025 0.41 -3.3
23,975 - Rru_B0025 0.41 -4.3
24,022 - Rru_B0025 0.60 -0.4
24,022 - Rru_B0025 0.60 -3.3
24,022 - Rru_B0025 0.60 -1.4
24,022 - Rru_B0025 0.60 -3.4
24,095 + Rru_B0025 0.89 -4.3
24,209 - +2.7
24,249 + -3.9
24,251 + -0.2
24,251 + -0.6
24,252 - +2.0
24,252 - -1.4
24,252 - -2.5
24,331 + -0.9
24,331 + -3.8
24,331 + -1.5
24,331 + -2.7
24,332 - -0.5
24,332 - -0.4
24,332 - -0.1
24,332 - -0.3
24,332 - -0.3
24,332 - -0.8
24,333 + -1.2
24,333 + +0.7
24,333 + +0.0
24,333 + -2.1
24,333 + -3.9
24,334 - +0.8
24,334 - -2.0
24,334 - +1.6
24,334 - +0.7
24,334 - -3.1
24,334 - +0.2
24,334 - -2.6
24,375 + -2.1
24,375 + +0.6
24,375 + -1.3
24,375 + +0.5
24,376 - -1.3
24,422 + +3.0
24,422 + -4.1
24,423 - +0.5
24,423 - +0.6
24,452 + +0.2
24,452 + +0.8
24,452 + -0.3
24,452 + +1.7
24,452 + -3.0
24,453 - -0.9
24,453 - +0.7
24,453 - -3.5
24,453 - -3.8
24,453 - +0.1
24,453 - -4.1
24,453 - -2.4
24,453 - -1.8
24,453 - +0.2
24,453 - +1.4
24,453 - -3.2
24,530 + -4.1
24,531 - +1.1
24,589 + Rru_B0026 0.16 +0.4
24,669 + Rru_B0026 0.26 +0.9
24,670 - Rru_B0026 0.26 -0.9
24,722 + Rru_B0026 0.33 -0.3
24,723 - Rru_B0026 0.33 +1.9
24,723 - Rru_B0026 0.33 +0.5
24,723 - Rru_B0026 0.33 -0.8
24,724 + Rru_B0026 0.33 +0.8
24,724 + Rru_B0026 0.33 -0.7
24,724 + Rru_B0026 0.33 -3.5
24,724 + Rru_B0026 0.33 -0.9
24,724 + Rru_B0026 0.33 -0.1
24,725 - Rru_B0026 0.33 +1.8
24,725 - Rru_B0026 0.33 -0.1
24,725 - Rru_B0026 0.33 -0.9
24,725 - Rru_B0026 0.33 -0.6
24,725 - Rru_B0026 0.33 +0.4
24,725 - Rru_B0026 0.33 -3.0
24,725 - Rru_B0026 0.33 +0.7
24,725 - Rru_B0026 0.33 +0.5
24,725 - Rru_B0026 0.33 +0.8
24,746 + Rru_B0026 0.36 -2.8
24,746 + Rru_B0026 0.36 +0.5
24,917 - Rru_B0026 0.57 +1.1
24,917 - Rru_B0026 0.57 +1.4
24,917 - Rru_B0026 0.57 +0.6
25,050 + Rru_B0026 0.74 +0.2

Or see this region's nucleotide sequence