Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1344

Experiment: Gentamicin 0.00048828125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntndhA and ndhI are separated by 42 nucleotidesndhI and ndhG are separated by 3 nucleotidesndhG and ndhE are separated by 18 nucleotides Synpcc7942_1343: ndhA - NADH dehydrogenase subunit H, at 1,377,217 to 1,378,335 ndhA Synpcc7942_1344: ndhI - NADH dehydrogenase subunit I, at 1,378,378 to 1,378,986 ndhI Synpcc7942_1345: ndhG - NADH dehydrogenase subunit J, at 1,378,990 to 1,379,595 ndhG Synpcc7942_1346: ndhE - NADH dehydrogenase subunit K, at 1,379,614 to 1,379,925 ndhE Position (kb) 1378 1379Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1378.342 kb on - strandat 1378.812 kb on + strand, within ndhIat 1378.886 kb on + strand, within ndhIat 1378.889 kb on - strand, within ndhIat 1378.905 kb on - strand, within ndhIat 1378.950 kb on + strandat 1378.958 kb on - strandat 1378.988 kb on - strandat 1379.937 kb on + strandat 1379.975 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.00048828125 mg/ml
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1,378,342 - -0.6
1,378,812 + ndhI Synpcc7942_1344 0.71 -1.6
1,378,886 + ndhI Synpcc7942_1344 0.83 -2.6
1,378,889 - ndhI Synpcc7942_1344 0.84 -3.2
1,378,905 - ndhI Synpcc7942_1344 0.87 -4.2
1,378,950 + -1.6
1,378,958 - -1.0
1,378,988 - -1.2
1,379,937 + +1.4
1,379,975 + +1.5

Or see this region's nucleotide sequence