Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1008

Experiment: Gentamicin 0.00048828125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.00048828125 mg/ml
1,019,423	+	fumC	Synpcc7942_1007	0.37	+1.1
1,019,493	+	fumC	Synpcc7942_1007	0.42	+0.3
1,019,606	-	fumC	Synpcc7942_1007	0.50	+0.1
1,019,634	+	fumC	Synpcc7942_1007	0.52	-1.3
1,019,706	-	fumC	Synpcc7942_1007	0.58	+0.7
1,019,706	-	fumC	Synpcc7942_1007	0.58	-1.0
1,019,707	-	fumC	Synpcc7942_1007	0.58	-0.4
1,019,708	-	fumC	Synpcc7942_1007	0.58	-0.6
1,019,780	+	fumC	Synpcc7942_1007	0.63	-1.6
1,019,782	+	fumC	Synpcc7942_1007	0.63	-2.0
1,019,788	-	fumC	Synpcc7942_1007	0.64	+0.0
1,019,796	+	fumC	Synpcc7942_1007	0.64	-3.2
1,019,799	-	fumC	Synpcc7942_1007	0.64	-1.6
1,019,926	-	fumC	Synpcc7942_1007	0.73	-0.2
1,019,936	-	fumC	Synpcc7942_1007	0.74	-1.6
1,020,150	-	fumC	Synpcc7942_1007	0.90	-1.6
1,020,203	+				-1.6
1,020,219	+				+0.2
1,020,219	+				-1.6
1,020,252	-				-3.2
1,020,280	-				+0.7
1,020,338	-				-1.6
1,020,348	+				-1.6
1,020,365	-				-0.6
1,020,422	+	purU	Synpcc7942_1008	0.11	-0.0
1,020,472	+	purU	Synpcc7942_1008	0.16	+0.2
1,020,521	+	purU	Synpcc7942_1008	0.22	-2.6
1,020,528	+	purU	Synpcc7942_1008	0.23	-3.6
1,020,571	-	purU	Synpcc7942_1008	0.28	-3.6
1,020,917	-	purU	Synpcc7942_1008	0.68	-3.2
1,020,955	+	purU	Synpcc7942_1008	0.73	-1.6
1,020,957	+	purU	Synpcc7942_1008	0.73	-1.6
1,021,033	-	purU	Synpcc7942_1008	0.82	-0.9
1,021,033	-	purU	Synpcc7942_1008	0.82	-1.6
1,021,054	-	purU	Synpcc7942_1008	0.84	-2.6
1,021,083	+	purU	Synpcc7942_1008	0.88	-0.8
1,021,152	-				-4.2
1,021,157	+				-2.2
1,021,227	+				+0.9
1,021,268	-				-0.6
1,021,313	+				-0.3
1,021,314	-				+1.6
1,021,350	-				+1.9
1,021,351	+				+0.9
1,021,353	+				+0.6
1,021,361	+				+1.5
1,021,362	+				+2.1
1,021,369	-				+1.6
1,021,369	-				-0.4
1,021,423	-		Synpcc7942_1009	0.12	+1.8
1,021,973	-				+1.2
1,022,070	+		Synpcc7942_1010	0.14	-0.0
1,022,083	+		Synpcc7942_1010	0.16	+1.2
1,022,171	-		Synpcc7942_1010	0.28	+1.2
1,022,172	-		Synpcc7942_1010	0.28	-0.3