Experiment: Gentamicin 0.00048828125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0952 and Synpcc7942_0953 are separated by 123 nucleotides Synpcc7942_0953 and Synpcc7942_0954 are separated by 57 nucleotides Synpcc7942_0954 and Synpcc7942_0955 overlap by 29 nucleotides Synpcc7942_0955 and Synpcc7942_0956 are separated by 135 nucleotides
Synpcc7942_0952: Synpcc7942_0952 - hypothetical protein, at 960,829 to 961,620
_0952
Synpcc7942_0953: Synpcc7942_0953 - hypothetical protein, at 961,744 to 962,208
_0953
Synpcc7942_0954: Synpcc7942_0954 - glycine cleavage T-protein-like, at 962,266 to 963,300
_0954
Synpcc7942_0955: Synpcc7942_0955 - hypothetical protein, at 963,272 to 963,790
_0955
Synpcc7942_0956: Synpcc7942_0956 - hypothetical protein, at 963,926 to 965,068
_0956
Position (kb) 962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 961.333 kb on + strand, within Synpcc7942_0952 at 961.349 kb on - strand, within Synpcc7942_0952 at 961.367 kb on + strand, within Synpcc7942_0952 at 961.375 kb on - strand, within Synpcc7942_0952 at 961.415 kb on - strand, within Synpcc7942_0952 at 961.447 kb on + strand, within Synpcc7942_0952 at 961.452 kb on + strand, within Synpcc7942_0952 at 961.474 kb on - strand, within Synpcc7942_0952 at 961.484 kb on - strand, within Synpcc7942_0952 at 961.488 kb on + strand at 961.511 kb on - strand, within Synpcc7942_0952 at 961.537 kb on - strand, within Synpcc7942_0952 at 961.564 kb on + strand at 961.564 kb on + strand at 961.564 kb on + strand at 961.566 kb on - strand at 961.567 kb on - strand at 961.572 kb on - strand at 961.572 kb on - strand at 961.574 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.601 kb on + strand at 961.715 kb on - strand at 961.789 kb on + strand at 961.801 kb on - strand at 961.816 kb on - strand, within Synpcc7942_0953 at 961.843 kb on - strand, within Synpcc7942_0953 at 961.887 kb on - strand, within Synpcc7942_0953 at 961.951 kb on - strand, within Synpcc7942_0953 at 961.976 kb on + strand, within Synpcc7942_0953 at 961.986 kb on + strand, within Synpcc7942_0953 at 962.000 kb on - strand, within Synpcc7942_0953 at 962.001 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.090 kb on - strand, within Synpcc7942_0953 at 962.092 kb on - strand, within Synpcc7942_0953 at 962.146 kb on - strand, within Synpcc7942_0953 at 962.175 kb on - strand at 962.189 kb on - strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.205 kb on - strand at 962.212 kb on - strand at 962.212 kb on - strand at 962.216 kb on + strand at 962.236 kb on + strand at 962.242 kb on + strand at 962.242 kb on - strand at 962.242 kb on - strand at 962.249 kb on - strand at 962.285 kb on - strand at 962.316 kb on - strand at 962.319 kb on - strand at 962.353 kb on + strand at 962.353 kb on + strand at 962.361 kb on - strand at 962.386 kb on - strand, within Synpcc7942_0954 at 962.386 kb on - strand, within Synpcc7942_0954 at 962.434 kb on + strand, within Synpcc7942_0954 at 962.434 kb on + strand, within Synpcc7942_0954 at 962.442 kb on - strand, within Synpcc7942_0954 at 962.442 kb on - strand, within Synpcc7942_0954 at 962.468 kb on - strand, within Synpcc7942_0954 at 962.500 kb on - strand, within Synpcc7942_0954 at 962.503 kb on + strand, within Synpcc7942_0954 at 962.510 kb on + strand, within Synpcc7942_0954 at 962.510 kb on + strand, within Synpcc7942_0954 at 962.524 kb on + strand, within Synpcc7942_0954 at 962.531 kb on - strand, within Synpcc7942_0954 at 962.539 kb on - strand, within Synpcc7942_0954 at 962.548 kb on - strand, within Synpcc7942_0954 at 962.548 kb on - strand, within Synpcc7942_0954 at 962.572 kb on + strand, within Synpcc7942_0954 at 962.590 kb on + strand, within Synpcc7942_0954 at 962.598 kb on - strand, within Synpcc7942_0954 at 962.599 kb on - strand, within Synpcc7942_0954 at 962.624 kb on + strand, within Synpcc7942_0954 at 962.631 kb on - strand, within Synpcc7942_0954 at 962.656 kb on + strand, within Synpcc7942_0954 at 962.670 kb on - strand, within Synpcc7942_0954 at 962.689 kb on - strand, within Synpcc7942_0954 at 962.699 kb on - strand, within Synpcc7942_0954 at 962.741 kb on + strand, within Synpcc7942_0954 at 962.741 kb on + strand, within Synpcc7942_0954 at 962.749 kb on - strand, within Synpcc7942_0954 at 962.749 kb on - strand, within Synpcc7942_0954 at 962.749 kb on - strand, within Synpcc7942_0954 at 962.755 kb on - strand, within Synpcc7942_0954 at 962.759 kb on + strand, within Synpcc7942_0954 at 962.766 kb on + strand, within Synpcc7942_0954 at 962.792 kb on + strand, within Synpcc7942_0954 at 962.793 kb on - strand, within Synpcc7942_0954 at 962.798 kb on - strand, within Synpcc7942_0954 at 962.799 kb on + strand, within Synpcc7942_0954 at 962.799 kb on + strand, within Synpcc7942_0954 at 962.807 kb on - strand, within Synpcc7942_0954 at 962.814 kb on - strand, within Synpcc7942_0954 at 962.825 kb on + strand, within Synpcc7942_0954 at 962.864 kb on + strand, within Synpcc7942_0954 at 962.928 kb on + strand, within Synpcc7942_0954 at 962.928 kb on + strand, within Synpcc7942_0954 at 962.928 kb on - strand, within Synpcc7942_0954 at 962.928 kb on - strand, within Synpcc7942_0954 at 962.964 kb on + strand, within Synpcc7942_0954 at 962.969 kb on + strand, within Synpcc7942_0954 at 963.006 kb on - strand, within Synpcc7942_0954 at 963.028 kb on - strand, within Synpcc7942_0954 at 963.031 kb on + strand, within Synpcc7942_0954 at 963.041 kb on - strand, within Synpcc7942_0954 at 963.041 kb on - strand, within Synpcc7942_0954 at 963.049 kb on - strand, within Synpcc7942_0954 at 963.049 kb on - strand, within Synpcc7942_0954 at 963.094 kb on + strand, within Synpcc7942_0954 at 963.097 kb on - strand, within Synpcc7942_0954 at 963.112 kb on + strand, within Synpcc7942_0954 at 963.147 kb on - strand, within Synpcc7942_0954 at 963.154 kb on - strand, within Synpcc7942_0954 at 963.157 kb on - strand, within Synpcc7942_0954 at 963.159 kb on + strand, within Synpcc7942_0954 at 963.192 kb on + strand, within Synpcc7942_0954 at 963.200 kb on + strand at 963.208 kb on - strand at 963.220 kb on - strand at 963.249 kb on + strand at 963.249 kb on + strand at 963.250 kb on - strand at 963.257 kb on - strand at 963.262 kb on - strand at 963.314 kb on - strand at 963.331 kb on - strand, within Synpcc7942_0955 at 963.379 kb on + strand, within Synpcc7942_0955 at 963.397 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand at 963.449 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand, within Synpcc7942_0955 at 963.454 kb on - strand, within Synpcc7942_0955 at 963.480 kb on - strand, within Synpcc7942_0955 at 963.494 kb on + strand, within Synpcc7942_0955 at 963.497 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.502 kb on - strand, within Synpcc7942_0955 at 963.506 kb on - strand, within Synpcc7942_0955 at 963.507 kb on - strand, within Synpcc7942_0955 at 963.507 kb on - strand, within Synpcc7942_0955 at 963.508 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.523 kb on + strand at 963.523 kb on + strand, within Synpcc7942_0955 at 963.554 kb on + strand, within Synpcc7942_0955 at 963.598 kb on + strand, within Synpcc7942_0955 at 963.599 kb on + strand, within Synpcc7942_0955 at 963.599 kb on + strand, within Synpcc7942_0955 at 963.606 kb on - strand, within Synpcc7942_0955 at 963.640 kb on + strand, within Synpcc7942_0955 at 963.647 kb on + strand, within Synpcc7942_0955 at 963.648 kb on - strand, within Synpcc7942_0955 at 963.674 kb on - strand, within Synpcc7942_0955 at 963.676 kb on + strand, within Synpcc7942_0955 at 963.769 kb on - strand at 963.801 kb on - strand at 963.801 kb on - strand at 963.823 kb on + strand at 963.824 kb on - strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.864 kb on + strand at 963.865 kb on + strand at 963.866 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.878 kb on + strand at 963.878 kb on + strand at 963.886 kb on - strand at 963.886 kb on - strand at 963.886 kb on - strand at 963.887 kb on - strand at 963.897 kb on - strand at 964.014 kb on + strand at 964.023 kb on - strand at 964.043 kb on - strand, within Synpcc7942_0956 at 964.043 kb on - strand, within Synpcc7942_0956 at 964.068 kb on - strand, within Synpcc7942_0956 at 964.068 kb on - strand, within Synpcc7942_0956 at 964.138 kb on - strand, within Synpcc7942_0956 at 964.150 kb on - strand, within Synpcc7942_0956 at 964.158 kb on - strand, within Synpcc7942_0956 at 964.172 kb on + strand, within Synpcc7942_0956 at 964.256 kb on + strand, within Synpcc7942_0956 at 964.280 kb on + strand, within Synpcc7942_0956
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.00048828125 mg/ml remove 961,333 + Synpcc7942_0952 0.64 +0.5 961,349 - Synpcc7942_0952 0.66 +1.0 961,367 + Synpcc7942_0952 0.68 +1.5 961,375 - Synpcc7942_0952 0.69 -0.0 961,415 - Synpcc7942_0952 0.74 +1.8 961,447 + Synpcc7942_0952 0.78 +0.6 961,452 + Synpcc7942_0952 0.79 +0.2 961,474 - Synpcc7942_0952 0.81 -0.3 961,484 - Synpcc7942_0952 0.83 +1.0 961,488 + -2.6 961,511 - Synpcc7942_0952 0.86 +0.1 961,537 - Synpcc7942_0952 0.89 +1.0 961,564 + -1.3 961,564 + +1.4 961,564 + -0.0 961,566 - -0.2 961,567 - +0.8 961,572 - +1.5 961,572 - +0.9 961,574 - -0.2 961,594 - +0.7 961,594 - +1.0 961,594 - +1.0 961,601 + +0.9 961,715 - -0.6 961,789 + -0.2 961,801 - -1.6 961,816 - Synpcc7942_0953 0.15 -0.6 961,843 - Synpcc7942_0953 0.21 +0.8 961,887 - Synpcc7942_0953 0.31 +0.2 961,951 - Synpcc7942_0953 0.45 -1.6 961,976 + Synpcc7942_0953 0.50 -0.2 961,986 + Synpcc7942_0953 0.52 +0.7 962,000 - Synpcc7942_0953 0.55 -0.4 962,001 + Synpcc7942_0953 0.55 -1.6 962,048 + Synpcc7942_0953 0.65 +1.0 962,048 + Synpcc7942_0953 0.65 -1.8 962,048 + Synpcc7942_0953 0.65 +1.2 962,056 - Synpcc7942_0953 0.67 +1.4 962,056 - Synpcc7942_0953 0.67 -0.0 962,056 - Synpcc7942_0953 0.67 -0.6 962,056 - Synpcc7942_0953 0.67 +2.5 962,056 - Synpcc7942_0953 0.67 +1.4 962,056 - Synpcc7942_0953 0.67 +1.4 962,090 - Synpcc7942_0953 0.74 -3.6 962,092 - Synpcc7942_0953 0.75 +1.0 962,146 - Synpcc7942_0953 0.86 -1.6 962,175 - -3.6 962,189 - -0.2 962,204 + +0.0 962,204 + -1.6 962,204 + -1.3 962,204 + -0.8 962,205 - +0.4 962,212 - -0.7 962,212 - +2.3 962,216 + +0.4 962,236 + -1.6 962,242 + -0.6 962,242 - +1.8 962,242 - -2.2 962,249 - -2.4 962,285 - -1.2 962,316 - +2.8 962,319 - -1.6 962,353 + -0.2 962,353 + +2.5 962,361 - +0.5 962,386 - Synpcc7942_0954 0.12 -0.5 962,386 - Synpcc7942_0954 0.12 +0.4 962,434 + Synpcc7942_0954 0.16 +0.5 962,434 + Synpcc7942_0954 0.16 -0.3 962,442 - Synpcc7942_0954 0.17 +2.4 962,442 - Synpcc7942_0954 0.17 +0.7 962,468 - Synpcc7942_0954 0.20 -0.0 962,500 - Synpcc7942_0954 0.23 +0.4 962,503 + Synpcc7942_0954 0.23 +0.6 962,510 + Synpcc7942_0954 0.24 +0.7 962,510 + Synpcc7942_0954 0.24 +2.1 962,524 + Synpcc7942_0954 0.25 -0.4 962,531 - Synpcc7942_0954 0.26 +0.6 962,539 - Synpcc7942_0954 0.26 -1.6 962,548 - Synpcc7942_0954 0.27 +1.1 962,548 - Synpcc7942_0954 0.27 +1.1 962,572 + Synpcc7942_0954 0.30 +1.2 962,590 + Synpcc7942_0954 0.31 +0.4 962,598 - Synpcc7942_0954 0.32 +1.4 962,599 - Synpcc7942_0954 0.32 +2.0 962,624 + Synpcc7942_0954 0.35 -0.5 962,631 - Synpcc7942_0954 0.35 +2.7 962,656 + Synpcc7942_0954 0.38 +0.3 962,670 - Synpcc7942_0954 0.39 -1.1 962,689 - Synpcc7942_0954 0.41 +0.2 962,699 - Synpcc7942_0954 0.42 -0.2 962,741 + Synpcc7942_0954 0.46 -1.0 962,741 + Synpcc7942_0954 0.46 +1.2 962,749 - Synpcc7942_0954 0.47 +0.4 962,749 - Synpcc7942_0954 0.47 +1.3 962,749 - Synpcc7942_0954 0.47 +1.3 962,755 - Synpcc7942_0954 0.47 -1.6 962,759 + Synpcc7942_0954 0.48 -1.2 962,766 + Synpcc7942_0954 0.48 +0.5 962,792 + Synpcc7942_0954 0.51 +0.7 962,793 - Synpcc7942_0954 0.51 -0.9 962,798 - Synpcc7942_0954 0.51 +2.1 962,799 + Synpcc7942_0954 0.51 -0.4 962,799 + Synpcc7942_0954 0.51 +0.8 962,807 - Synpcc7942_0954 0.52 +1.0 962,814 - Synpcc7942_0954 0.53 -0.8 962,825 + Synpcc7942_0954 0.54 +1.0 962,864 + Synpcc7942_0954 0.58 +0.2 962,928 + Synpcc7942_0954 0.64 +1.0 962,928 + Synpcc7942_0954 0.64 -0.8 962,928 - Synpcc7942_0954 0.64 +0.4 962,928 - Synpcc7942_0954 0.64 +0.6 962,964 + Synpcc7942_0954 0.67 +0.6 962,969 + Synpcc7942_0954 0.68 -2.6 963,006 - Synpcc7942_0954 0.71 +2.0 963,028 - Synpcc7942_0954 0.74 +1.3 963,031 + Synpcc7942_0954 0.74 -1.6 963,041 - Synpcc7942_0954 0.75 +0.7 963,041 - Synpcc7942_0954 0.75 -1.6 963,049 - Synpcc7942_0954 0.76 -0.6 963,049 - Synpcc7942_0954 0.76 -1.6 963,094 + Synpcc7942_0954 0.80 +1.2 963,097 - Synpcc7942_0954 0.80 +1.2 963,112 + Synpcc7942_0954 0.82 -1.6 963,147 - Synpcc7942_0954 0.85 -2.6 963,154 - Synpcc7942_0954 0.86 -0.4 963,157 - Synpcc7942_0954 0.86 +1.2 963,159 + Synpcc7942_0954 0.86 -2.0 963,192 + Synpcc7942_0954 0.89 +0.7 963,200 + -1.0 963,208 - -0.2 963,220 - +1.5 963,249 + -0.0 963,249 + +1.2 963,250 - +1.0 963,257 - +1.7 963,262 - +1.0 963,314 - +1.7 963,331 - Synpcc7942_0955 0.11 +0.7 963,379 + Synpcc7942_0955 0.21 +0.5 963,397 - Synpcc7942_0955 0.24 -0.0 963,449 - Synpcc7942_0955 0.34 -1.6 963,449 - +1.4 963,449 - Synpcc7942_0955 0.34 +1.7 963,449 - Synpcc7942_0955 0.34 -0.9 963,454 - Synpcc7942_0955 0.35 +1.5 963,480 - Synpcc7942_0955 0.40 +0.4 963,494 + Synpcc7942_0955 0.43 +0.8 963,497 + Synpcc7942_0955 0.43 +0.9 963,499 + Synpcc7942_0955 0.44 +1.3 963,499 + Synpcc7942_0955 0.44 +1.6 963,499 + Synpcc7942_0955 0.44 +1.5 963,502 - Synpcc7942_0955 0.44 +0.4 963,506 - Synpcc7942_0955 0.45 +0.8 963,507 - Synpcc7942_0955 0.45 +1.5 963,507 - Synpcc7942_0955 0.45 +1.0 963,508 + Synpcc7942_0955 0.45 -1.6 963,513 + Synpcc7942_0955 0.46 +3.5 963,513 + Synpcc7942_0955 0.46 +1.7 963,513 + Synpcc7942_0955 0.46 +1.1 963,521 - Synpcc7942_0955 0.48 -0.2 963,521 - Synpcc7942_0955 0.48 -1.0 963,521 - Synpcc7942_0955 0.48 -2.2 963,521 - Synpcc7942_0955 0.48 -1.0 963,521 - Synpcc7942_0955 0.48 +0.4 963,521 - Synpcc7942_0955 0.48 -1.6 963,521 - Synpcc7942_0955 0.48 -0.0 963,521 - Synpcc7942_0955 0.48 +0.1 963,521 - Synpcc7942_0955 0.48 -0.0 963,523 + -0.0 963,523 + Synpcc7942_0955 0.48 +1.0 963,554 + Synpcc7942_0955 0.54 +0.2 963,598 + Synpcc7942_0955 0.63 +1.3 963,599 + Synpcc7942_0955 0.63 +0.3 963,599 + Synpcc7942_0955 0.63 -0.6 963,606 - Synpcc7942_0955 0.64 +0.6 963,640 + Synpcc7942_0955 0.71 +1.2 963,647 + Synpcc7942_0955 0.72 +1.0 963,648 - Synpcc7942_0955 0.72 +0.7 963,674 - Synpcc7942_0955 0.77 +2.1 963,676 + Synpcc7942_0955 0.78 +1.5 963,769 - +0.9 963,801 - -1.0 963,801 - -0.5 963,823 + +2.2 963,824 - +0.5 963,863 + +0.2 963,863 + +1.0 963,863 + -0.3 963,863 + +1.9 963,863 + -0.4 963,864 + -0.5 963,865 + -2.4 963,866 - +0.7 963,871 - +1.2 963,871 - -1.0 963,871 - -0.2 963,871 - -0.3 963,871 - +1.4 963,871 - +0.7 963,871 - -0.1 963,878 + -0.0 963,878 + +0.7 963,886 - -0.0 963,886 - -0.6 963,886 - +0.6 963,887 - +2.2 963,897 - -0.8 964,014 + -0.0 964,023 - -0.9 964,043 - Synpcc7942_0956 0.10 -2.2 964,043 - Synpcc7942_0956 0.10 -0.5 964,068 - Synpcc7942_0956 0.12 -1.6 964,068 - Synpcc7942_0956 0.12 -1.6 964,138 - Synpcc7942_0956 0.19 -0.0 964,150 - Synpcc7942_0956 0.20 +0.5 964,158 - Synpcc7942_0956 0.20 -0.6 964,172 + Synpcc7942_0956 0.22 -1.6 964,256 + Synpcc7942_0956 0.29 -1.0 964,280 + Synpcc7942_0956 0.31 -0.3
Or see this region's nucleotide sequence