Experiment: Gentamicin 0.00048828125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0950 and nadC are separated by 99 nucleotides nadC and Synpcc7942_0952 are separated by 143 nucleotides
Synpcc7942_0950: Synpcc7942_0950 - putative multiple sugar transport system substrate-binding protein, at 958,421 to 959,737
_0950
Synpcc7942_0951: nadC - nicotinate-nucleotide pyrophosphorylase, at 959,837 to 960,685
nadC
Synpcc7942_0952: Synpcc7942_0952 - hypothetical protein, at 960,829 to 961,620
_0952
Position (kb) 959
960
961 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 958.839 kb on + strand, within Synpcc7942_0950 at 958.847 kb on - strand, within Synpcc7942_0950 at 958.858 kb on - strand, within Synpcc7942_0950 at 958.882 kb on - strand, within Synpcc7942_0950 at 958.911 kb on + strand, within Synpcc7942_0950 at 958.915 kb on - strand, within Synpcc7942_0950 at 958.936 kb on + strand, within Synpcc7942_0950 at 958.970 kb on - strand, within Synpcc7942_0950 at 958.970 kb on - strand, within Synpcc7942_0950 at 958.985 kb on - strand, within Synpcc7942_0950 at 959.006 kb on - strand, within Synpcc7942_0950 at 959.029 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand at 959.122 kb on - strand, within Synpcc7942_0950 at 959.122 kb on - strand, within Synpcc7942_0950 at 959.122 kb on - strand, within Synpcc7942_0950 at 959.129 kb on + strand, within Synpcc7942_0950 at 959.129 kb on - strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.148 kb on - strand, within Synpcc7942_0950 at 959.148 kb on - strand, within Synpcc7942_0950 at 959.156 kb on + strand, within Synpcc7942_0950 at 959.156 kb on + strand, within Synpcc7942_0950 at 959.158 kb on - strand, within Synpcc7942_0950 at 959.177 kb on + strand, within Synpcc7942_0950 at 959.195 kb on + strand, within Synpcc7942_0950 at 959.219 kb on - strand, within Synpcc7942_0950 at 959.252 kb on - strand, within Synpcc7942_0950 at 959.317 kb on - strand, within Synpcc7942_0950 at 959.317 kb on - strand, within Synpcc7942_0950 at 959.365 kb on + strand, within Synpcc7942_0950 at 959.434 kb on + strand, within Synpcc7942_0950 at 959.442 kb on - strand, within Synpcc7942_0950 at 959.468 kb on - strand, within Synpcc7942_0950 at 959.468 kb on - strand, within Synpcc7942_0950 at 959.505 kb on + strand, within Synpcc7942_0950 at 959.525 kb on + strand, within Synpcc7942_0950 at 959.570 kb on + strand, within Synpcc7942_0950 at 959.645 kb on - strand at 959.645 kb on - strand at 959.645 kb on - strand at 959.645 kb on - strand at 959.661 kb on + strand at 959.661 kb on - strand at 959.661 kb on - strand at 959.666 kb on + strand at 959.692 kb on - strand at 959.698 kb on + strand at 959.724 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.772 kb on + strand at 959.782 kb on + strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.819 kb on + strand at 959.847 kb on + strand at 959.850 kb on - strand at 959.921 kb on + strand at 959.922 kb on + strand, within nadC at 959.923 kb on - strand, within nadC at 959.930 kb on - strand, within nadC at 960.002 kb on + strand, within nadC at 960.018 kb on + strand, within nadC at 960.094 kb on + strand, within nadC at 960.103 kb on + strand, within nadC at 960.118 kb on + strand, within nadC at 960.126 kb on - strand, within nadC at 960.126 kb on - strand, within nadC at 960.137 kb on + strand, within nadC at 960.146 kb on - strand, within nadC at 960.265 kb on + strand, within nadC at 960.273 kb on - strand, within nadC at 960.309 kb on + strand, within nadC at 960.435 kb on + strand, within nadC at 960.443 kb on - strand, within nadC at 960.687 kb on + strand at 960.687 kb on + strand at 960.695 kb on - strand at 960.695 kb on - strand at 960.707 kb on - strand at 960.707 kb on - strand at 960.717 kb on - strand at 960.727 kb on - strand at 960.735 kb on + strand at 960.735 kb on + strand at 960.737 kb on + strand at 960.743 kb on - strand at 960.752 kb on - strand at 960.767 kb on - strand at 960.802 kb on - strand at 960.818 kb on + strand at 960.818 kb on + strand at 960.826 kb on + strand at 960.826 kb on + strand at 960.834 kb on - strand at 960.891 kb on + strand at 960.892 kb on - strand at 960.895 kb on + strand at 960.905 kb on - strand at 961.003 kb on - strand, within Synpcc7942_0952 at 961.024 kb on - strand, within Synpcc7942_0952 at 961.051 kb on + strand, within Synpcc7942_0952 at 961.093 kb on - strand, within Synpcc7942_0952 at 961.118 kb on + strand, within Synpcc7942_0952 at 961.128 kb on + strand, within Synpcc7942_0952 at 961.149 kb on + strand, within Synpcc7942_0952 at 961.149 kb on + strand, within Synpcc7942_0952 at 961.153 kb on + strand, within Synpcc7942_0952 at 961.157 kb on - strand, within Synpcc7942_0952 at 961.157 kb on - strand, within Synpcc7942_0952 at 961.227 kb on - strand, within Synpcc7942_0952 at 961.237 kb on + strand, within Synpcc7942_0952 at 961.333 kb on + strand, within Synpcc7942_0952 at 961.349 kb on - strand, within Synpcc7942_0952 at 961.367 kb on + strand, within Synpcc7942_0952 at 961.375 kb on - strand, within Synpcc7942_0952 at 961.415 kb on - strand, within Synpcc7942_0952 at 961.447 kb on + strand, within Synpcc7942_0952 at 961.452 kb on + strand, within Synpcc7942_0952 at 961.474 kb on - strand, within Synpcc7942_0952 at 961.484 kb on - strand, within Synpcc7942_0952 at 961.488 kb on + strand at 961.511 kb on - strand, within Synpcc7942_0952 at 961.537 kb on - strand, within Synpcc7942_0952 at 961.564 kb on + strand at 961.564 kb on + strand at 961.564 kb on + strand at 961.566 kb on - strand at 961.567 kb on - strand at 961.572 kb on - strand at 961.572 kb on - strand at 961.574 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.601 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.00048828125 mg/ml remove 958,839 + Synpcc7942_0950 0.32 +1.5 958,847 - Synpcc7942_0950 0.32 +2.6 958,858 - Synpcc7942_0950 0.33 +0.2 958,882 - Synpcc7942_0950 0.35 -0.4 958,911 + Synpcc7942_0950 0.37 -1.6 958,915 - Synpcc7942_0950 0.38 +1.2 958,936 + Synpcc7942_0950 0.39 +0.9 958,970 - Synpcc7942_0950 0.42 -1.6 958,970 - Synpcc7942_0950 0.42 +0.7 958,985 - Synpcc7942_0950 0.43 +1.2 959,006 - Synpcc7942_0950 0.44 +0.5 959,029 + Synpcc7942_0950 0.46 -0.6 959,114 + Synpcc7942_0950 0.53 -0.6 959,114 + Synpcc7942_0950 0.53 -1.6 959,114 + -0.6 959,122 - Synpcc7942_0950 0.53 +0.2 959,122 - Synpcc7942_0950 0.53 -0.0 959,122 - Synpcc7942_0950 0.53 +0.7 959,129 + Synpcc7942_0950 0.54 +0.8 959,129 - Synpcc7942_0950 0.54 -0.0 959,140 + Synpcc7942_0950 0.55 -0.0 959,140 + Synpcc7942_0950 0.55 +0.3 959,140 + Synpcc7942_0950 0.55 +1.0 959,148 - Synpcc7942_0950 0.55 -0.4 959,148 - Synpcc7942_0950 0.55 +1.5 959,156 + Synpcc7942_0950 0.56 -0.0 959,156 + Synpcc7942_0950 0.56 +0.4 959,158 - Synpcc7942_0950 0.56 -0.0 959,177 + Synpcc7942_0950 0.57 +1.7 959,195 + Synpcc7942_0950 0.59 +1.4 959,219 - Synpcc7942_0950 0.61 +1.1 959,252 - Synpcc7942_0950 0.63 -0.0 959,317 - Synpcc7942_0950 0.68 +1.8 959,317 - Synpcc7942_0950 0.68 +1.5 959,365 + Synpcc7942_0950 0.72 +0.5 959,434 + Synpcc7942_0950 0.77 -0.0 959,442 - Synpcc7942_0950 0.78 -0.6 959,468 - Synpcc7942_0950 0.79 -0.0 959,468 - Synpcc7942_0950 0.79 +1.2 959,505 + Synpcc7942_0950 0.82 +0.6 959,525 + Synpcc7942_0950 0.84 -1.0 959,570 + Synpcc7942_0950 0.87 +0.3 959,645 - +1.2 959,645 - -0.3 959,645 - -0.0 959,645 - +1.4 959,661 + +1.0 959,661 - +0.2 959,661 - -1.6 959,666 + +1.3 959,692 - -0.9 959,698 + -0.0 959,724 + +1.8 959,745 + +0.2 959,745 + +0.1 959,745 + +0.4 959,745 + +0.4 959,753 - +1.0 959,753 - -1.2 959,753 - +0.6 959,753 - +1.4 959,753 - +1.7 959,753 - +1.2 959,772 + +0.0 959,782 + +1.8 959,790 - +1.5 959,790 - +0.6 959,819 + -2.6 959,847 + -4.0 959,850 - -3.0 959,921 + -0.6 959,922 + nadC Synpcc7942_0951 0.10 -2.6 959,923 - nadC Synpcc7942_0951 0.10 -2.6 959,930 - nadC Synpcc7942_0951 0.11 -1.6 960,002 + nadC Synpcc7942_0951 0.19 -2.6 960,018 + nadC Synpcc7942_0951 0.21 -2.6 960,094 + nadC Synpcc7942_0951 0.30 -2.6 960,103 + nadC Synpcc7942_0951 0.31 -2.6 960,118 + nadC Synpcc7942_0951 0.33 -2.2 960,126 - nadC Synpcc7942_0951 0.34 -4.0 960,126 - nadC Synpcc7942_0951 0.34 +0.7 960,137 + nadC Synpcc7942_0951 0.35 -3.6 960,146 - nadC Synpcc7942_0951 0.36 -0.6 960,265 + nadC Synpcc7942_0951 0.50 -1.6 960,273 - nadC Synpcc7942_0951 0.51 -2.6 960,309 + nadC Synpcc7942_0951 0.56 -2.6 960,435 + nadC Synpcc7942_0951 0.70 -4.4 960,443 - nadC Synpcc7942_0951 0.71 -3.2 960,687 + +0.5 960,687 + -1.6 960,695 - -2.6 960,695 - +0.0 960,707 - +3.0 960,707 - +1.0 960,717 - +0.4 960,727 - +1.8 960,735 + -0.6 960,735 + -1.0 960,737 + +1.2 960,743 - +1.5 960,752 - -0.6 960,767 - +0.2 960,802 - +1.4 960,818 + +2.2 960,818 + +1.4 960,826 + +0.8 960,826 + +0.7 960,834 - +0.3 960,891 + +0.4 960,892 - +1.3 960,895 + +0.2 960,905 - +0.4 961,003 - Synpcc7942_0952 0.22 +0.6 961,024 - Synpcc7942_0952 0.25 +1.5 961,051 + Synpcc7942_0952 0.28 -0.2 961,093 - Synpcc7942_0952 0.33 -2.6 961,118 + Synpcc7942_0952 0.36 -1.0 961,128 + Synpcc7942_0952 0.38 -0.9 961,149 + Synpcc7942_0952 0.40 +0.2 961,149 + Synpcc7942_0952 0.40 +0.5 961,153 + Synpcc7942_0952 0.41 -1.6 961,157 - Synpcc7942_0952 0.41 +0.7 961,157 - Synpcc7942_0952 0.41 -0.0 961,227 - Synpcc7942_0952 0.50 +0.7 961,237 + Synpcc7942_0952 0.52 -2.1 961,333 + Synpcc7942_0952 0.64 +0.5 961,349 - Synpcc7942_0952 0.66 +1.0 961,367 + Synpcc7942_0952 0.68 +1.5 961,375 - Synpcc7942_0952 0.69 -0.0 961,415 - Synpcc7942_0952 0.74 +1.8 961,447 + Synpcc7942_0952 0.78 +0.6 961,452 + Synpcc7942_0952 0.79 +0.2 961,474 - Synpcc7942_0952 0.81 -0.3 961,484 - Synpcc7942_0952 0.83 +1.0 961,488 + -2.6 961,511 - Synpcc7942_0952 0.86 +0.1 961,537 - Synpcc7942_0952 0.89 +1.0 961,564 + -1.3 961,564 + +1.4 961,564 + -0.0 961,566 - -0.2 961,567 - +0.8 961,572 - +1.5 961,572 - +0.9 961,574 - -0.2 961,594 - +0.7 961,594 - +1.0 961,594 - +1.0 961,601 + +0.9
Or see this region's nucleotide sequence