Experiment: Gentamicin 0.00048828125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0945 and aoxA are separated by 373 nucleotides aoxA and ggtA are separated by 18 nucleotides
Synpcc7942_0945: Synpcc7942_0945 - hypothetical protein, at 952,793 to 953,767
_0945
Synpcc7942_0946: aoxA - UDP-galactopyranose mutase, at 954,141 to 955,628
aoxA
Synpcc7942_0947: ggtA - ATPase, at 955,647 to 956,714
ggtA
Position (kb) 954
955
956 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 953.191 kb on + strand, within Synpcc7942_0945 at 953.425 kb on + strand, within Synpcc7942_0945 at 953.443 kb on - strand, within Synpcc7942_0945 at 953.514 kb on + strand, within Synpcc7942_0945 at 953.613 kb on - strand, within Synpcc7942_0945 at 953.613 kb on - strand, within Synpcc7942_0945 at 953.648 kb on - strand, within Synpcc7942_0945 at 953.650 kb on - strand, within Synpcc7942_0945 at 953.652 kb on + strand, within Synpcc7942_0945 at 953.675 kb on + strand at 953.675 kb on + strand at 953.679 kb on + strand at 953.710 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.720 kb on - strand at 953.720 kb on - strand at 953.720 kb on - strand at 953.827 kb on + strand at 953.850 kb on + strand at 953.874 kb on + strand at 953.911 kb on + strand at 953.928 kb on - strand at 954.001 kb on - strand at 954.037 kb on - strand at 954.057 kb on - strand at 954.060 kb on - strand at 954.071 kb on + strand at 954.075 kb on - strand at 954.075 kb on - strand at 954.170 kb on + strand at 954.178 kb on - strand at 954.230 kb on + strand at 954.231 kb on + strand at 954.238 kb on - strand at 954.239 kb on - strand at 954.239 kb on - strand at 954.244 kb on - strand at 954.250 kb on - strand at 954.250 kb on - strand at 954.252 kb on + strand at 954.260 kb on - strand at 954.267 kb on + strand at 954.267 kb on + strand at 954.275 kb on - strand at 954.302 kb on - strand, within aoxA at 954.326 kb on - strand at 954.372 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.397 kb on - strand, within aoxA at 954.397 kb on - strand, within aoxA at 954.407 kb on - strand, within aoxA at 954.431 kb on - strand, within aoxA at 954.446 kb on - strand, within aoxA at 954.447 kb on - strand, within aoxA at 954.468 kb on - strand, within aoxA at 954.480 kb on + strand, within aoxA at 954.482 kb on - strand, within aoxA at 954.492 kb on - strand, within aoxA at 954.546 kb on + strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.566 kb on + strand, within aoxA at 954.567 kb on - strand, within aoxA at 954.569 kb on - strand, within aoxA at 954.569 kb on - strand, within aoxA at 954.595 kb on + strand, within aoxA at 954.595 kb on + strand, within aoxA at 954.606 kb on + strand, within aoxA at 954.608 kb on + strand, within aoxA at 954.608 kb on + strand, within aoxA at 954.614 kb on - strand, within aoxA at 954.614 kb on - strand, within aoxA at 954.635 kb on + strand, within aoxA at 954.651 kb on + strand, within aoxA at 954.654 kb on - strand, within aoxA at 954.662 kb on + strand, within aoxA at 954.673 kb on + strand, within aoxA at 954.683 kb on - strand, within aoxA at 954.718 kb on - strand, within aoxA at 954.718 kb on - strand, within aoxA at 954.729 kb on + strand, within aoxA at 954.737 kb on + strand, within aoxA at 954.737 kb on - strand, within aoxA at 954.744 kb on - strand, within aoxA at 954.788 kb on - strand, within aoxA at 954.871 kb on - strand, within aoxA at 954.878 kb on + strand, within aoxA at 954.886 kb on - strand, within aoxA at 954.886 kb on - strand, within aoxA at 954.912 kb on - strand, within aoxA at 954.922 kb on - strand, within aoxA at 954.953 kb on + strand, within aoxA at 954.975 kb on + strand, within aoxA at 955.000 kb on - strand, within aoxA at 955.036 kb on + strand, within aoxA at 955.045 kb on - strand, within aoxA at 955.076 kb on - strand, within aoxA at 955.084 kb on + strand, within aoxA at 955.094 kb on + strand, within aoxA at 955.102 kb on - strand, within aoxA at 955.111 kb on + strand, within aoxA at 955.133 kb on - strand, within aoxA at 955.152 kb on + strand, within aoxA at 955.152 kb on + strand, within aoxA at 955.152 kb on + strand, within aoxA at 955.160 kb on - strand, within aoxA at 955.160 kb on - strand at 955.161 kb on + strand, within aoxA at 955.161 kb on + strand, within aoxA at 955.169 kb on - strand, within aoxA at 955.169 kb on - strand, within aoxA at 955.169 kb on - strand, within aoxA at 955.169 kb on - strand, within aoxA at 955.181 kb on - strand, within aoxA at 955.198 kb on + strand, within aoxA at 955.203 kb on + strand, within aoxA at 955.221 kb on + strand, within aoxA at 955.221 kb on + strand, within aoxA at 955.222 kb on - strand, within aoxA at 955.238 kb on - strand, within aoxA at 955.242 kb on + strand, within aoxA at 955.249 kb on - strand, within aoxA at 955.295 kb on + strand, within aoxA at 955.295 kb on + strand, within aoxA at 955.303 kb on - strand, within aoxA at 955.303 kb on - strand, within aoxA at 955.303 kb on - strand, within aoxA at 955.303 kb on - strand, within aoxA at 955.331 kb on + strand, within aoxA at 955.339 kb on - strand, within aoxA at 955.358 kb on - strand, within aoxA at 955.362 kb on - strand, within aoxA at 955.394 kb on - strand, within aoxA at 955.408 kb on - strand, within aoxA at 955.417 kb on + strand, within aoxA at 955.417 kb on + strand, within aoxA at 955.425 kb on - strand, within aoxA at 955.428 kb on + strand, within aoxA at 955.451 kb on - strand, within aoxA at 955.477 kb on + strand, within aoxA at 955.477 kb on + strand, within aoxA at 955.508 kb on + strand at 955.545 kb on + strand at 955.553 kb on - strand at 955.553 kb on - strand at 955.554 kb on - strand at 955.578 kb on + strand at 955.583 kb on + strand at 955.591 kb on - strand at 955.591 kb on - strand at 955.591 kb on - strand at 955.591 kb on - strand at 955.632 kb on - strand at 955.637 kb on - strand at 955.639 kb on + strand at 955.645 kb on + strand at 955.707 kb on + strand at 955.707 kb on + strand at 955.715 kb on - strand at 955.715 kb on - strand at 955.720 kb on + strand at 955.727 kb on + strand at 955.727 kb on + strand at 955.728 kb on - strand at 955.760 kb on - strand, within ggtA at 955.768 kb on - strand, within ggtA at 955.768 kb on - strand, within ggtA at 955.786 kb on + strand, within ggtA at 955.794 kb on - strand, within ggtA at 955.824 kb on - strand, within ggtA at 955.843 kb on + strand, within ggtA at 955.849 kb on + strand, within ggtA at 955.858 kb on - strand, within ggtA at 955.865 kb on + strand, within ggtA at 955.890 kb on + strand, within ggtA at 955.953 kb on + strand, within ggtA at 955.956 kb on - strand, within ggtA at 955.956 kb on - strand, within ggtA at 955.961 kb on - strand, within ggtA at 955.961 kb on - strand, within ggtA at 955.961 kb on - strand, within ggtA at 955.961 kb on - strand, within ggtA at 955.999 kb on - strand, within ggtA at 956.022 kb on - strand, within ggtA at 956.080 kb on + strand, within ggtA at 956.080 kb on - strand, within ggtA at 956.090 kb on + strand, within ggtA at 956.090 kb on - strand, within ggtA at 956.104 kb on + strand, within ggtA at 956.112 kb on - strand, within ggtA at 956.127 kb on + strand, within ggtA at 956.132 kb on + strand, within ggtA at 956.135 kb on - strand, within ggtA at 956.137 kb on + strand, within ggtA at 956.137 kb on + strand, within ggtA at 956.137 kb on + strand, within ggtA at 956.145 kb on - strand, within ggtA at 956.164 kb on - strand, within ggtA at 956.171 kb on + strand, within ggtA at 956.181 kb on - strand, within ggtA at 956.284 kb on + strand, within ggtA at 956.304 kb on + strand, within ggtA at 956.304 kb on + strand, within ggtA at 956.304 kb on + strand, within ggtA at 956.304 kb on + strand, within ggtA at 956.339 kb on + strand, within ggtA at 956.347 kb on - strand, within ggtA at 956.347 kb on - strand, within ggtA at 956.438 kb on + strand, within ggtA at 956.438 kb on + strand, within ggtA at 956.443 kb on + strand, within ggtA at 956.450 kb on + strand, within ggtA at 956.458 kb on - strand, within ggtA at 956.522 kb on + strand, within ggtA at 956.565 kb on + strand, within ggtA at 956.572 kb on + strand, within ggtA at 956.572 kb on + strand, within ggtA at 956.572 kb on + strand, within ggtA at 956.572 kb on + strand, within ggtA at 956.580 kb on - strand, within ggtA at 956.580 kb on - strand, within ggtA at 956.604 kb on - strand, within ggtA
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.00048828125 mg/ml remove 953,191 + Synpcc7942_0945 0.41 -2.6 953,425 + Synpcc7942_0945 0.65 +1.3 953,443 - Synpcc7942_0945 0.67 +1.2 953,514 + Synpcc7942_0945 0.74 +0.4 953,613 - Synpcc7942_0945 0.84 +0.1 953,613 - Synpcc7942_0945 0.84 +1.4 953,648 - Synpcc7942_0945 0.88 +1.3 953,650 - Synpcc7942_0945 0.88 +1.1 953,652 + Synpcc7942_0945 0.88 +1.5 953,675 + -0.2 953,675 + -0.6 953,679 + +0.4 953,710 + -1.6 953,712 + +0.9 953,712 + +0.9 953,712 + -0.3 953,712 + +0.9 953,720 - +0.1 953,720 - +1.4 953,720 - -0.3 953,827 + +1.2 953,850 + +0.1 953,874 + -0.4 953,911 + +1.5 953,928 - +0.3 954,001 - +1.4 954,037 - +0.7 954,057 - +1.9 954,060 - +2.5 954,071 + +1.3 954,075 - +1.5 954,075 - +0.0 954,170 + -0.8 954,178 - -2.0 954,230 + +0.3 954,231 + +2.2 954,238 - +0.8 954,239 - -0.9 954,239 - -0.9 954,244 - +1.5 954,250 - -1.6 954,250 - -0.2 954,252 + -2.0 954,260 - -1.6 954,267 + -1.3 954,267 + +0.9 954,275 - +3.0 954,302 - aoxA Synpcc7942_0946 0.11 +1.9 954,326 - +1.2 954,372 + aoxA Synpcc7942_0946 0.16 -0.0 954,389 + aoxA Synpcc7942_0946 0.17 +1.0 954,389 + aoxA Synpcc7942_0946 0.17 -0.3 954,389 + aoxA Synpcc7942_0946 0.17 +0.2 954,389 + aoxA Synpcc7942_0946 0.17 +1.9 954,389 + aoxA Synpcc7942_0946 0.17 -0.0 954,389 + aoxA Synpcc7942_0946 0.17 -1.2 954,397 - aoxA Synpcc7942_0946 0.17 -2.6 954,397 - aoxA Synpcc7942_0946 0.17 +1.0 954,407 - aoxA Synpcc7942_0946 0.18 +1.3 954,431 - aoxA Synpcc7942_0946 0.19 -1.4 954,446 - aoxA Synpcc7942_0946 0.20 +1.5 954,447 - aoxA Synpcc7942_0946 0.21 -1.6 954,468 - aoxA Synpcc7942_0946 0.22 +0.6 954,480 + aoxA Synpcc7942_0946 0.23 +1.5 954,482 - aoxA Synpcc7942_0946 0.23 +1.9 954,492 - aoxA Synpcc7942_0946 0.24 +0.6 954,546 + aoxA Synpcc7942_0946 0.27 +2.0 954,554 - aoxA Synpcc7942_0946 0.28 +0.8 954,554 - aoxA Synpcc7942_0946 0.28 -1.3 954,554 - aoxA Synpcc7942_0946 0.28 +1.0 954,554 - aoxA Synpcc7942_0946 0.28 +0.7 954,566 + aoxA Synpcc7942_0946 0.29 +1.1 954,567 - aoxA Synpcc7942_0946 0.29 +0.9 954,569 - aoxA Synpcc7942_0946 0.29 +1.0 954,569 - aoxA Synpcc7942_0946 0.29 +1.4 954,595 + aoxA Synpcc7942_0946 0.31 -0.5 954,595 + aoxA Synpcc7942_0946 0.31 +0.4 954,606 + aoxA Synpcc7942_0946 0.31 -0.2 954,608 + aoxA Synpcc7942_0946 0.31 +0.8 954,608 + aoxA Synpcc7942_0946 0.31 +1.3 954,614 - aoxA Synpcc7942_0946 0.32 +0.7 954,614 - aoxA Synpcc7942_0946 0.32 -2.6 954,635 + aoxA Synpcc7942_0946 0.33 +0.3 954,651 + aoxA Synpcc7942_0946 0.34 -0.8 954,654 - aoxA Synpcc7942_0946 0.34 +0.5 954,662 + aoxA Synpcc7942_0946 0.35 +1.8 954,673 + aoxA Synpcc7942_0946 0.36 +0.0 954,683 - aoxA Synpcc7942_0946 0.36 +0.8 954,718 - aoxA Synpcc7942_0946 0.39 +0.4 954,718 - aoxA Synpcc7942_0946 0.39 +1.4 954,729 + aoxA Synpcc7942_0946 0.40 -1.6 954,737 + aoxA Synpcc7942_0946 0.40 +2.3 954,737 - aoxA Synpcc7942_0946 0.40 +0.4 954,744 - aoxA Synpcc7942_0946 0.41 +1.3 954,788 - aoxA Synpcc7942_0946 0.43 -0.0 954,871 - aoxA Synpcc7942_0946 0.49 -3.6 954,878 + aoxA Synpcc7942_0946 0.50 +0.8 954,886 - aoxA Synpcc7942_0946 0.50 +1.2 954,886 - aoxA Synpcc7942_0946 0.50 -0.6 954,912 - aoxA Synpcc7942_0946 0.52 +0.7 954,922 - aoxA Synpcc7942_0946 0.52 +2.1 954,953 + aoxA Synpcc7942_0946 0.55 +1.8 954,975 + aoxA Synpcc7942_0946 0.56 +2.4 955,000 - aoxA Synpcc7942_0946 0.58 -1.4 955,036 + aoxA Synpcc7942_0946 0.60 +1.4 955,045 - aoxA Synpcc7942_0946 0.61 -0.0 955,076 - aoxA Synpcc7942_0946 0.63 -2.6 955,084 + aoxA Synpcc7942_0946 0.63 -0.1 955,094 + aoxA Synpcc7942_0946 0.64 +0.1 955,102 - aoxA Synpcc7942_0946 0.65 +1.1 955,111 + aoxA Synpcc7942_0946 0.65 -1.0 955,133 - aoxA Synpcc7942_0946 0.67 +1.0 955,152 + aoxA Synpcc7942_0946 0.68 -0.0 955,152 + aoxA Synpcc7942_0946 0.68 -0.3 955,152 + aoxA Synpcc7942_0946 0.68 +1.1 955,160 - aoxA Synpcc7942_0946 0.68 +1.5 955,160 - +1.8 955,161 + aoxA Synpcc7942_0946 0.69 +1.8 955,161 + aoxA Synpcc7942_0946 0.69 -3.2 955,169 - aoxA Synpcc7942_0946 0.69 +2.2 955,169 - aoxA Synpcc7942_0946 0.69 +1.0 955,169 - aoxA Synpcc7942_0946 0.69 +0.7 955,169 - aoxA Synpcc7942_0946 0.69 -0.4 955,181 - aoxA Synpcc7942_0946 0.70 -0.3 955,198 + aoxA Synpcc7942_0946 0.71 -0.3 955,203 + aoxA Synpcc7942_0946 0.71 -3.2 955,221 + aoxA Synpcc7942_0946 0.73 -1.6 955,221 + aoxA Synpcc7942_0946 0.73 +0.2 955,222 - aoxA Synpcc7942_0946 0.73 +0.2 955,238 - aoxA Synpcc7942_0946 0.74 -0.5 955,242 + aoxA Synpcc7942_0946 0.74 +1.2 955,249 - aoxA Synpcc7942_0946 0.74 +1.5 955,295 + aoxA Synpcc7942_0946 0.78 +1.1 955,295 + aoxA Synpcc7942_0946 0.78 +0.2 955,303 - aoxA Synpcc7942_0946 0.78 -1.4 955,303 - aoxA Synpcc7942_0946 0.78 -1.0 955,303 - aoxA Synpcc7942_0946 0.78 +0.5 955,303 - aoxA Synpcc7942_0946 0.78 -0.1 955,331 + aoxA Synpcc7942_0946 0.80 +1.0 955,339 - aoxA Synpcc7942_0946 0.81 +0.9 955,358 - aoxA Synpcc7942_0946 0.82 -1.1 955,362 - aoxA Synpcc7942_0946 0.82 +0.6 955,394 - aoxA Synpcc7942_0946 0.84 +1.1 955,408 - aoxA Synpcc7942_0946 0.85 +0.2 955,417 + aoxA Synpcc7942_0946 0.86 +0.3 955,417 + aoxA Synpcc7942_0946 0.86 -1.0 955,425 - aoxA Synpcc7942_0946 0.86 +0.2 955,428 + aoxA Synpcc7942_0946 0.86 +0.8 955,451 - aoxA Synpcc7942_0946 0.88 -2.6 955,477 + aoxA Synpcc7942_0946 0.90 -0.0 955,477 + aoxA Synpcc7942_0946 0.90 +1.0 955,508 + -0.3 955,545 + +0.8 955,553 - -1.6 955,553 - -0.6 955,554 - +2.0 955,578 + +1.1 955,583 + -1.6 955,591 - +0.5 955,591 - -0.5 955,591 - -0.0 955,591 - -0.4 955,632 - -2.6 955,637 - -0.3 955,639 + -0.5 955,645 + +0.2 955,707 + +0.1 955,707 + -0.0 955,715 - +2.4 955,715 - -1.9 955,720 + +0.7 955,727 + -0.6 955,727 + -0.6 955,728 - +1.5 955,760 - ggtA Synpcc7942_0947 0.11 +0.4 955,768 - ggtA Synpcc7942_0947 0.11 -0.0 955,768 - ggtA Synpcc7942_0947 0.11 +0.9 955,786 + ggtA Synpcc7942_0947 0.13 +0.4 955,794 - ggtA Synpcc7942_0947 0.14 -1.0 955,824 - ggtA Synpcc7942_0947 0.17 +2.1 955,843 + ggtA Synpcc7942_0947 0.18 -0.0 955,849 + ggtA Synpcc7942_0947 0.19 -3.2 955,858 - ggtA Synpcc7942_0947 0.20 +0.1 955,865 + ggtA Synpcc7942_0947 0.20 -4.2 955,890 + ggtA Synpcc7942_0947 0.23 +2.0 955,953 + ggtA Synpcc7942_0947 0.29 +1.4 955,956 - ggtA Synpcc7942_0947 0.29 -2.2 955,956 - ggtA Synpcc7942_0947 0.29 +1.6 955,961 - ggtA Synpcc7942_0947 0.29 -0.1 955,961 - ggtA Synpcc7942_0947 0.29 -1.0 955,961 - ggtA Synpcc7942_0947 0.29 +1.2 955,961 - ggtA Synpcc7942_0947 0.29 +0.7 955,999 - ggtA Synpcc7942_0947 0.33 +0.6 956,022 - ggtA Synpcc7942_0947 0.35 +0.3 956,080 + ggtA Synpcc7942_0947 0.41 +0.9 956,080 - ggtA Synpcc7942_0947 0.41 -1.6 956,090 + ggtA Synpcc7942_0947 0.41 +1.2 956,090 - ggtA Synpcc7942_0947 0.41 +0.1 956,104 + ggtA Synpcc7942_0947 0.43 +0.4 956,112 - ggtA Synpcc7942_0947 0.44 +1.6 956,127 + ggtA Synpcc7942_0947 0.45 +0.4 956,132 + ggtA Synpcc7942_0947 0.45 +1.7 956,135 - ggtA Synpcc7942_0947 0.46 -0.5 956,137 + ggtA Synpcc7942_0947 0.46 +2.2 956,137 + ggtA Synpcc7942_0947 0.46 -0.0 956,137 + ggtA Synpcc7942_0947 0.46 -0.4 956,145 - ggtA Synpcc7942_0947 0.47 +0.6 956,164 - ggtA Synpcc7942_0947 0.48 +1.9 956,171 + ggtA Synpcc7942_0947 0.49 -0.0 956,181 - ggtA Synpcc7942_0947 0.50 +0.9 956,284 + ggtA Synpcc7942_0947 0.60 -0.6 956,304 + ggtA Synpcc7942_0947 0.62 +0.7 956,304 + ggtA Synpcc7942_0947 0.62 +0.7 956,304 + ggtA Synpcc7942_0947 0.62 +0.5 956,304 + ggtA Synpcc7942_0947 0.62 -0.6 956,339 + ggtA Synpcc7942_0947 0.65 +0.5 956,347 - ggtA Synpcc7942_0947 0.66 -0.0 956,347 - ggtA Synpcc7942_0947 0.66 -0.6 956,438 + ggtA Synpcc7942_0947 0.74 +1.3 956,438 + ggtA Synpcc7942_0947 0.74 -0.3 956,443 + ggtA Synpcc7942_0947 0.75 +1.1 956,450 + ggtA Synpcc7942_0947 0.75 +0.0 956,458 - ggtA Synpcc7942_0947 0.76 +0.8 956,522 + ggtA Synpcc7942_0947 0.82 +1.2 956,565 + ggtA Synpcc7942_0947 0.86 -1.6 956,572 + ggtA Synpcc7942_0947 0.87 +0.5 956,572 + ggtA Synpcc7942_0947 0.87 +0.5 956,572 + ggtA Synpcc7942_0947 0.87 +1.4 956,572 + ggtA Synpcc7942_0947 0.87 -0.6 956,580 - ggtA Synpcc7942_0947 0.87 +2.2 956,580 - ggtA Synpcc7942_0947 0.87 +1.0 956,604 - ggtA Synpcc7942_0947 0.90 -0.1
Or see this region's nucleotide sequence