Experiment: Gentamicin 0.00048828125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0473 and Synpcc7942_0474 are separated by 93 nucleotides Synpcc7942_0474 and petN are separated by 15 nucleotides petN and clpS are separated by 7 nucleotides clpS and ylmG are separated by 31 nucleotides ylmG and lepB are separated by 30 nucleotides lepB and lepA overlap by 1 nucleotides
Synpcc7942_0473: Synpcc7942_0473 - NADH:flavin oxidoreductase Old Yellow Enzyme family-like, at 459,096 to 460,202
_0473
Synpcc7942_0474: Synpcc7942_0474 - hypothetical protein, at 460,296 to 460,433
_0474
Synpcc7942_0475: petN - cytochrome b6-f complex subunit VIII, at 460,449 to 460,544
petN
Synpcc7942_0476: clpS - ATP-dependent Clp protease adaptor, at 460,552 to 460,962
clpS
Synpcc7942_0477: ylmG - conserved hypothetical protein YCF19, at 460,994 to 461,293
ylmG
Synpcc7942_0478: lepB - thylakoidal processing peptidase. Serine peptidase. MEROPS family S26A, at 461,324 to 461,935
lepB
Synpcc7942_0479: lepA - GTP-binding protein LepA, at 461,935 to 463,749
lepA
Position (kb) 460
461
462 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 459.996 kb on + strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.054 kb on + strand, within Synpcc7942_0473 at 460.073 kb on + strand, within Synpcc7942_0473 at 460.075 kb on - strand, within Synpcc7942_0473 at 460.081 kb on - strand, within Synpcc7942_0473 at 460.115 kb on + strand at 460.123 kb on - strand at 460.123 kb on - strand at 460.131 kb on + strand at 460.147 kb on - strand at 460.168 kb on - strand at 460.168 kb on - strand at 460.295 kb on + strand at 460.653 kb on + strand at 460.656 kb on - strand, within clpS at 460.656 kb on - strand, within clpS at 460.666 kb on - strand, within clpS at 460.671 kb on - strand, within clpS at 460.688 kb on + strand, within clpS at 460.690 kb on + strand, within clpS at 460.695 kb on + strand, within clpS at 460.703 kb on + strand, within clpS at 460.717 kb on + strand, within clpS at 460.717 kb on + strand, within clpS at 460.769 kb on - strand, within clpS at 460.863 kb on + strand, within clpS at 460.881 kb on - strand, within clpS at 460.883 kb on + strand, within clpS at 460.885 kb on + strand, within clpS at 460.891 kb on - strand, within clpS at 460.915 kb on - strand, within clpS at 460.925 kb on - strand at 460.961 kb on + strand at 460.964 kb on - strand at 461.046 kb on - strand, within ylmG at 461.046 kb on - strand, within ylmG at 461.059 kb on - strand, within ylmG at 461.110 kb on - strand, within ylmG at 461.165 kb on - strand, within ylmG at 461.288 kb on + strand at 461.296 kb on - strand at 461.298 kb on - strand at 461.335 kb on - strand at 461.338 kb on - strand at 461.362 kb on + strand at 461.363 kb on + strand at 461.363 kb on + strand at 461.371 kb on - strand at 461.371 kb on - strand at 461.372 kb on + strand at 461.378 kb on - strand at 461.380 kb on + strand at 461.902 kb on - strand at 461.931 kb on + strand at 461.951 kb on + strand at 461.951 kb on + strand at 461.963 kb on + strand at 461.963 kb on + strand at 461.973 kb on - strand at 461.983 kb on + strand at 461.988 kb on + strand at 462.097 kb on - strand at 462.155 kb on + strand, within lepA at 462.193 kb on + strand, within lepA at 462.203 kb on + strand, within lepA at 462.223 kb on - strand, within lepA at 462.271 kb on + strand, within lepA at 462.292 kb on - strand, within lepA
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.00048828125 mg/ml remove 459,996 + Synpcc7942_0473 0.81 -1.3 460,004 - Synpcc7942_0473 0.82 +1.1 460,004 - Synpcc7942_0473 0.82 +0.1 460,004 - Synpcc7942_0473 0.82 +0.9 460,004 - Synpcc7942_0473 0.82 +1.2 460,054 + Synpcc7942_0473 0.87 -1.2 460,073 + Synpcc7942_0473 0.88 -2.6 460,075 - Synpcc7942_0473 0.88 +0.4 460,081 - Synpcc7942_0473 0.89 +0.2 460,115 + -1.0 460,123 - +1.6 460,123 - -0.2 460,131 + +0.2 460,147 - -0.6 460,168 - +1.0 460,168 - +0.4 460,295 + -1.6 460,653 + -0.9 460,656 - clpS Synpcc7942_0476 0.25 +1.2 460,656 - clpS Synpcc7942_0476 0.25 -1.6 460,666 - clpS Synpcc7942_0476 0.28 +2.7 460,671 - clpS Synpcc7942_0476 0.29 +2.7 460,688 + clpS Synpcc7942_0476 0.33 +1.9 460,690 + clpS Synpcc7942_0476 0.34 +1.7 460,695 + clpS Synpcc7942_0476 0.35 -0.1 460,703 + clpS Synpcc7942_0476 0.37 -0.6 460,717 + clpS Synpcc7942_0476 0.40 +0.3 460,717 + clpS Synpcc7942_0476 0.40 -1.3 460,769 - clpS Synpcc7942_0476 0.53 +0.7 460,863 + clpS Synpcc7942_0476 0.76 +1.2 460,881 - clpS Synpcc7942_0476 0.80 +1.6 460,883 + clpS Synpcc7942_0476 0.81 -0.1 460,885 + clpS Synpcc7942_0476 0.81 +1.4 460,891 - clpS Synpcc7942_0476 0.82 +1.6 460,915 - clpS Synpcc7942_0476 0.88 +1.4 460,925 - +1.2 460,961 + +1.2 460,964 - +0.8 461,046 - ylmG Synpcc7942_0477 0.17 -0.0 461,046 - ylmG Synpcc7942_0477 0.17 -2.6 461,059 - ylmG Synpcc7942_0477 0.22 -2.6 461,110 - ylmG Synpcc7942_0477 0.39 -3.4 461,165 - ylmG Synpcc7942_0477 0.57 -1.6 461,288 + -0.4 461,296 - -1.6 461,298 - -3.9 461,335 - -1.6 461,338 - -0.7 461,362 + +1.7 461,363 + +2.3 461,363 + -0.6 461,371 - +1.0 461,371 - -2.6 461,372 + +2.9 461,378 - +1.0 461,380 + -0.1 461,902 - +1.2 461,931 + +1.3 461,951 + -0.4 461,951 + +0.2 461,963 + -0.6 461,963 + -1.0 461,973 - +1.3 461,983 + -0.8 461,988 + -3.2 462,097 - +1.7 462,155 + lepA Synpcc7942_0479 0.12 -0.9 462,193 + lepA Synpcc7942_0479 0.14 -0.8 462,203 + lepA Synpcc7942_0479 0.15 -2.1 462,223 - lepA Synpcc7942_0479 0.16 -1.9 462,271 + lepA Synpcc7942_0479 0.19 -0.6 462,292 - lepA Synpcc7942_0479 0.20 -3.2
Or see this region's nucleotide sequence