Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27065

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27060 and RR42_RS27065 are separated by 393 nucleotidesRR42_RS27065 and RR42_RS27070 are separated by 27 nucleotides RR42_RS27060: RR42_RS27060 - cation transporter, at 1,424,104 to 1,425,243 _RS27060 RR42_RS27065: RR42_RS27065 - hypothetical protein, at 1,425,637 to 1,425,993 _RS27065 RR42_RS27070: RR42_RS27070 - membrane protein, at 1,426,021 to 1,426,725 _RS27070 Position (kb) 1425 1426Strain fitness (log2 ratio) -1 0 1at 1424.736 kb on - strand, within RR42_RS27060at 1425.123 kb on + strand, within RR42_RS27060at 1425.124 kb on - strand, within RR42_RS27060at 1425.189 kb on + strandat 1425.881 kb on + strand, within RR42_RS27065at 1425.993 kb on + strandat 1426.150 kb on + strand, within RR42_RS27070at 1426.150 kb on + strand, within RR42_RS27070at 1426.151 kb on - strand, within RR42_RS27070at 1426.151 kb on - strand, within RR42_RS27070at 1426.151 kb on - strand, within RR42_RS27070at 1426.268 kb on - strand, within RR42_RS27070at 1426.284 kb on - strand, within RR42_RS27070at 1426.459 kb on - strand, within RR42_RS27070at 1426.834 kb on - strandat 1426.834 kb on - strandat 1426.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,424,736 - RR42_RS27060 0.55 +1.1
1,425,123 + RR42_RS27060 0.89 +1.1
1,425,124 - RR42_RS27060 0.89 -1.0
1,425,189 + +0.7
1,425,881 + RR42_RS27065 0.68 -1.2
1,425,993 + -0.7
1,426,150 + RR42_RS27070 0.18 +0.7
1,426,150 + RR42_RS27070 0.18 -0.9
1,426,151 - RR42_RS27070 0.18 -1.6
1,426,151 - RR42_RS27070 0.18 +0.6
1,426,151 - RR42_RS27070 0.18 +0.6
1,426,268 - RR42_RS27070 0.35 -0.1
1,426,284 - RR42_RS27070 0.37 +0.5
1,426,459 - RR42_RS27070 0.62 +0.5
1,426,834 - +0.4
1,426,834 - +1.1
1,426,951 - -1.1

Or see this region's nucleotide sequence