Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25745

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25740 and RR42_RS25745 are separated by 299 nucleotidesRR42_RS25745 and RR42_RS25750 are separated by 155 nucleotides RR42_RS25740: RR42_RS25740 - hypothetical protein, at 1,116,463 to 1,117,206 _RS25740 RR42_RS25745: RR42_RS25745 - tRNA-Thr, at 1,117,506 to 1,117,580 _RS25745 RR42_RS25750: RR42_RS25750 - aromatic ring-cleaving dioxygenase, at 1,117,736 to 1,118,557 _RS25750 Position (kb) 1117 1118Strain fitness (log2 ratio) -2 -1 0 1 2at 1116.513 kb on + strandat 1116.543 kb on + strand, within RR42_RS25740at 1116.623 kb on - strand, within RR42_RS25740at 1116.837 kb on - strand, within RR42_RS25740at 1116.848 kb on + strand, within RR42_RS25740at 1116.849 kb on - strand, within RR42_RS25740at 1116.849 kb on - strand, within RR42_RS25740at 1117.235 kb on - strandat 1117.283 kb on + strandat 1117.390 kb on + strandat 1117.479 kb on - strandat 1117.483 kb on + strandat 1117.483 kb on + strandat 1117.634 kb on + strandat 1117.634 kb on + strandat 1117.635 kb on - strandat 1117.635 kb on - strandat 1117.635 kb on - strandat 1117.753 kb on + strandat 1117.753 kb on + strandat 1117.753 kb on + strandat 1117.753 kb on + strandat 1117.754 kb on - strandat 1117.754 kb on - strandat 1117.754 kb on - strandat 1118.022 kb on + strand, within RR42_RS25750at 1118.022 kb on + strand, within RR42_RS25750at 1118.023 kb on - strand, within RR42_RS25750at 1118.157 kb on + strand, within RR42_RS25750at 1118.157 kb on + strand, within RR42_RS25750at 1118.157 kb on + strand, within RR42_RS25750at 1118.158 kb on - strand, within RR42_RS25750at 1118.286 kb on + strand, within RR42_RS25750at 1118.287 kb on - strand, within RR42_RS25750at 1118.298 kb on + strand, within RR42_RS25750at 1118.304 kb on + strand, within RR42_RS25750at 1118.304 kb on + strand, within RR42_RS25750at 1118.305 kb on - strand, within RR42_RS25750at 1118.319 kb on + strand, within RR42_RS25750at 1118.322 kb on + strand, within RR42_RS25750at 1118.323 kb on - strand, within RR42_RS25750at 1118.323 kb on - strand, within RR42_RS25750at 1118.323 kb on - strand, within RR42_RS25750at 1118.328 kb on + strand, within RR42_RS25750at 1118.328 kb on + strand, within RR42_RS25750at 1118.328 kb on + strand, within RR42_RS25750at 1118.329 kb on - strand, within RR42_RS25750at 1118.329 kb on - strand, within RR42_RS25750at 1118.473 kb on - strand, within RR42_RS25750

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,116,513 + -1.4
1,116,543 + RR42_RS25740 0.11 +0.2
1,116,623 - RR42_RS25740 0.22 +1.0
1,116,837 - RR42_RS25740 0.50 +0.6
1,116,848 + RR42_RS25740 0.52 -1.9
1,116,849 - RR42_RS25740 0.52 -0.1
1,116,849 - RR42_RS25740 0.52 -0.4
1,117,235 - +0.4
1,117,283 + +1.9
1,117,390 + -0.3
1,117,479 - -0.8
1,117,483 + +1.9
1,117,483 + -0.6
1,117,634 + -1.1
1,117,634 + -0.4
1,117,635 - +0.9
1,117,635 - -0.7
1,117,635 - -1.1
1,117,753 + -0.5
1,117,753 + -0.1
1,117,753 + +0.8
1,117,753 + +0.1
1,117,754 - +0.1
1,117,754 - -0.7
1,117,754 - +0.1
1,118,022 + RR42_RS25750 0.35 -1.3
1,118,022 + RR42_RS25750 0.35 -0.2
1,118,023 - RR42_RS25750 0.35 -1.2
1,118,157 + RR42_RS25750 0.51 -0.3
1,118,157 + RR42_RS25750 0.51 +0.4
1,118,157 + RR42_RS25750 0.51 -1.8
1,118,158 - RR42_RS25750 0.51 -0.9
1,118,286 + RR42_RS25750 0.67 -0.4
1,118,287 - RR42_RS25750 0.67 +0.4
1,118,298 + RR42_RS25750 0.68 -0.9
1,118,304 + RR42_RS25750 0.69 -0.1
1,118,304 + RR42_RS25750 0.69 -1.2
1,118,305 - RR42_RS25750 0.69 +0.3
1,118,319 + RR42_RS25750 0.71 +1.1
1,118,322 + RR42_RS25750 0.71 +0.6
1,118,323 - RR42_RS25750 0.71 -1.8
1,118,323 - RR42_RS25750 0.71 +1.4
1,118,323 - RR42_RS25750 0.71 -0.5
1,118,328 + RR42_RS25750 0.72 -0.3
1,118,328 + RR42_RS25750 0.72 -0.9
1,118,328 + RR42_RS25750 0.72 +0.9
1,118,329 - RR42_RS25750 0.72 +0.3
1,118,329 - RR42_RS25750 0.72 -0.3
1,118,473 - RR42_RS25750 0.90 +1.5

Or see this region's nucleotide sequence