Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23495

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23490 and RR42_RS23495 are separated by 25 nucleotidesRR42_RS23495 and RR42_RS23500 are separated by 59 nucleotides RR42_RS23490: RR42_RS23490 - NADH oxidase, at 596,157 to 597,176 _RS23490 RR42_RS23495: RR42_RS23495 - benzene 1,2-dioxygenase, at 597,202 to 597,684 _RS23495 RR42_RS23500: RR42_RS23500 - benzene 1,2-dioxygenase, at 597,744 to 599,132 _RS23500 Position (kb) 597 598Strain fitness (log2 ratio) -2 -1 0 1 2at 596.269 kb on + strand, within RR42_RS23490at 596.269 kb on + strand, within RR42_RS23490at 596.270 kb on - strand, within RR42_RS23490at 596.270 kb on - strand, within RR42_RS23490at 596.270 kb on - strand, within RR42_RS23490at 596.324 kb on - strand, within RR42_RS23490at 596.449 kb on + strand, within RR42_RS23490at 596.449 kb on + strand, within RR42_RS23490at 596.450 kb on - strand, within RR42_RS23490at 596.450 kb on - strand, within RR42_RS23490at 596.664 kb on + strand, within RR42_RS23490at 596.665 kb on - strand, within RR42_RS23490at 596.752 kb on + strand, within RR42_RS23490at 596.752 kb on + strand, within RR42_RS23490at 596.752 kb on + strand, within RR42_RS23490at 596.752 kb on + strand, within RR42_RS23490at 596.752 kb on + strand, within RR42_RS23490at 596.753 kb on - strand, within RR42_RS23490at 596.984 kb on + strand, within RR42_RS23490at 596.985 kb on - strand, within RR42_RS23490at 596.986 kb on + strand, within RR42_RS23490at 596.987 kb on - strand, within RR42_RS23490at 597.169 kb on + strandat 597.169 kb on + strandat 597.169 kb on + strandat 597.169 kb on + strandat 597.212 kb on + strandat 597.212 kb on + strandat 597.212 kb on + strandat 597.212 kb on + strandat 597.213 kb on - strandat 597.213 kb on - strandat 597.213 kb on - strandat 597.236 kb on + strandat 597.257 kb on + strand, within RR42_RS23495at 597.303 kb on - strand, within RR42_RS23495at 597.326 kb on + strand, within RR42_RS23495at 597.327 kb on - strand, within RR42_RS23495at 597.327 kb on - strand, within RR42_RS23495at 597.599 kb on + strand, within RR42_RS23495at 597.818 kb on - strandat 598.045 kb on + strand, within RR42_RS23500at 598.102 kb on + strand, within RR42_RS23500at 598.102 kb on + strand, within RR42_RS23500at 598.339 kb on + strand, within RR42_RS23500at 598.425 kb on - strand, within RR42_RS23500at 598.425 kb on - strand, within RR42_RS23500at 598.438 kb on + strand, within RR42_RS23500at 598.514 kb on + strand, within RR42_RS23500at 598.516 kb on + strand, within RR42_RS23500at 598.516 kb on + strand, within RR42_RS23500at 598.517 kb on - strand, within RR42_RS23500at 598.517 kb on - strand, within RR42_RS23500

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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596,269 + RR42_RS23490 0.11 +0.9
596,269 + RR42_RS23490 0.11 -0.9
596,270 - RR42_RS23490 0.11 -1.4
596,270 - RR42_RS23490 0.11 +0.6
596,270 - RR42_RS23490 0.11 -0.0
596,324 - RR42_RS23490 0.16 -0.3
596,449 + RR42_RS23490 0.29 +0.3
596,449 + RR42_RS23490 0.29 +1.1
596,450 - RR42_RS23490 0.29 +0.1
596,450 - RR42_RS23490 0.29 +0.0
596,664 + RR42_RS23490 0.50 -0.4
596,665 - RR42_RS23490 0.50 +0.4
596,752 + RR42_RS23490 0.58 -1.7
596,752 + RR42_RS23490 0.58 +1.2
596,752 + RR42_RS23490 0.58 -0.2
596,752 + RR42_RS23490 0.58 -0.3
596,752 + RR42_RS23490 0.58 +2.1
596,753 - RR42_RS23490 0.58 +1.1
596,984 + RR42_RS23490 0.81 +0.7
596,985 - RR42_RS23490 0.81 -0.7
596,986 + RR42_RS23490 0.81 +2.5
596,987 - RR42_RS23490 0.81 +0.4
597,169 + -0.2
597,169 + -0.1
597,169 + +0.5
597,169 + -1.4
597,212 + +1.2
597,212 + +1.3
597,212 + +1.1
597,212 + +1.2
597,213 - -0.9
597,213 - -0.1
597,213 - -0.4
597,236 + -0.3
597,257 + RR42_RS23495 0.11 -0.3
597,303 - RR42_RS23495 0.21 +0.5
597,326 + RR42_RS23495 0.26 -0.6
597,327 - RR42_RS23495 0.26 -0.3
597,327 - RR42_RS23495 0.26 +0.4
597,599 + RR42_RS23495 0.82 +1.1
597,818 - +0.3
598,045 + RR42_RS23500 0.22 -1.6
598,102 + RR42_RS23500 0.26 +0.4
598,102 + RR42_RS23500 0.26 -2.0
598,339 + RR42_RS23500 0.43 -0.6
598,425 - RR42_RS23500 0.49 -1.0
598,425 - RR42_RS23500 0.49 +0.1
598,438 + RR42_RS23500 0.50 +0.1
598,514 + RR42_RS23500 0.55 +0.1
598,516 + RR42_RS23500 0.56 +0.8
598,516 + RR42_RS23500 0.56 -0.4
598,517 - RR42_RS23500 0.56 -0.4
598,517 - RR42_RS23500 0.56 +1.8

Or see this region's nucleotide sequence