Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22480 and RR42_RS22485 are separated by 54 nucleotides RR42_RS22485 and RR42_RS22490 are separated by 304 nucleotides
RR42_RS22480: RR42_RS22480 - FAD-dependent oxidoreductase, at 379,846 to 381,579
_RS22480
RR42_RS22485: RR42_RS22485 - MBL fold metallo-hydrolase, at 381,634 to 382,593
_RS22485
RR42_RS22490: RR42_RS22490 - IclR family transcriptional regulator, at 382,898 to 383,725
_RS22490
Position (kb) 381
382
383 Strain fitness (log2 ratio) -2
-1
0
1
2 at 380.698 kb on - strand, within RR42_RS22480 at 380.698 kb on - strand, within RR42_RS22480 at 380.698 kb on - strand, within RR42_RS22480 at 380.699 kb on + strand, within RR42_RS22480 at 381.047 kb on + strand, within RR42_RS22480 at 381.048 kb on - strand, within RR42_RS22480 at 381.194 kb on + strand, within RR42_RS22480 at 381.194 kb on + strand, within RR42_RS22480 at 381.194 kb on + strand, within RR42_RS22480 at 381.194 kb on + strand, within RR42_RS22480 at 381.194 kb on + strand, within RR42_RS22480 at 381.194 kb on + strand, within RR42_RS22480 at 381.195 kb on - strand, within RR42_RS22480 at 381.195 kb on - strand, within RR42_RS22480 at 381.195 kb on - strand, within RR42_RS22480 at 381.197 kb on + strand, within RR42_RS22480 at 381.197 kb on + strand, within RR42_RS22480 at 381.198 kb on - strand, within RR42_RS22480 at 381.260 kb on + strand, within RR42_RS22480 at 381.260 kb on + strand, within RR42_RS22480 at 381.261 kb on - strand, within RR42_RS22480 at 381.617 kb on + strand at 381.752 kb on + strand, within RR42_RS22485 at 381.752 kb on + strand, within RR42_RS22485 at 381.752 kb on + strand, within RR42_RS22485 at 381.753 kb on - strand, within RR42_RS22485 at 381.753 kb on - strand, within RR42_RS22485 at 381.753 kb on - strand, within RR42_RS22485 at 381.753 kb on - strand, within RR42_RS22485 at 381.753 kb on - strand, within RR42_RS22485 at 381.882 kb on - strand, within RR42_RS22485 at 382.028 kb on + strand, within RR42_RS22485 at 382.029 kb on - strand, within RR42_RS22485 at 382.029 kb on - strand, within RR42_RS22485 at 382.277 kb on + strand, within RR42_RS22485 at 382.278 kb on - strand, within RR42_RS22485 at 382.322 kb on + strand, within RR42_RS22485 at 382.323 kb on - strand, within RR42_RS22485 at 382.356 kb on - strand, within RR42_RS22485 at 382.373 kb on + strand, within RR42_RS22485 at 382.374 kb on - strand, within RR42_RS22485 at 382.512 kb on - strand at 382.517 kb on + strand at 382.517 kb on + strand at 382.518 kb on - strand at 382.695 kb on + strand at 382.696 kb on - strand at 382.696 kb on - strand at 382.696 kb on - strand at 382.696 kb on - strand at 382.696 kb on - strand at 382.697 kb on + strand at 382.697 kb on + strand at 382.698 kb on - strand at 382.698 kb on - strand at 382.698 kb on - strand at 382.698 kb on - strand at 382.698 kb on - strand at 382.698 kb on - strand at 382.728 kb on + strand at 382.798 kb on - strand at 382.869 kb on + strand at 382.869 kb on + strand at 382.869 kb on + strand at 382.870 kb on - strand at 382.870 kb on - strand at 382.870 kb on - strand at 382.872 kb on + strand at 382.872 kb on + strand at 382.872 kb on + strand at 382.873 kb on - strand at 382.873 kb on - strand at 382.873 kb on - strand at 382.873 kb on - strand at 383.093 kb on + strand, within RR42_RS22490 at 383.093 kb on + strand, within RR42_RS22490 at 383.093 kb on + strand, within RR42_RS22490 at 383.093 kb on + strand, within RR42_RS22490 at 383.093 kb on + strand, within RR42_RS22490 at 383.094 kb on - strand, within RR42_RS22490 at 383.189 kb on + strand, within RR42_RS22490 at 383.189 kb on + strand, within RR42_RS22490 at 383.190 kb on - strand, within RR42_RS22490 at 383.190 kb on - strand, within RR42_RS22490 at 383.310 kb on - strand, within RR42_RS22490
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 380,698 - RR42_RS22480 0.49 +0.1 380,698 - RR42_RS22480 0.49 +1.3 380,698 - RR42_RS22480 0.49 +2.2 380,699 + RR42_RS22480 0.49 -0.0 381,047 + RR42_RS22480 0.69 -0.5 381,048 - RR42_RS22480 0.69 -0.9 381,194 + RR42_RS22480 0.78 -1.7 381,194 + RR42_RS22480 0.78 -1.2 381,194 + RR42_RS22480 0.78 +2.3 381,194 + RR42_RS22480 0.78 -0.8 381,194 + RR42_RS22480 0.78 +0.9 381,194 + RR42_RS22480 0.78 -0.3 381,195 - RR42_RS22480 0.78 -0.2 381,195 - RR42_RS22480 0.78 +0.2 381,195 - RR42_RS22480 0.78 -0.4 381,197 + RR42_RS22480 0.78 -2.0 381,197 + RR42_RS22480 0.78 +0.2 381,198 - RR42_RS22480 0.78 -1.3 381,260 + RR42_RS22480 0.82 -1.3 381,260 + RR42_RS22480 0.82 -1.2 381,261 - RR42_RS22480 0.82 +0.1 381,617 + -0.3 381,752 + RR42_RS22485 0.12 -1.2 381,752 + RR42_RS22485 0.12 -1.1 381,752 + RR42_RS22485 0.12 +1.0 381,753 - RR42_RS22485 0.12 -0.5 381,753 - RR42_RS22485 0.12 +1.1 381,753 - RR42_RS22485 0.12 +0.1 381,753 - RR42_RS22485 0.12 +0.1 381,753 - RR42_RS22485 0.12 -0.1 381,882 - RR42_RS22485 0.26 -0.3 382,028 + RR42_RS22485 0.41 +0.3 382,029 - RR42_RS22485 0.41 +0.5 382,029 - RR42_RS22485 0.41 -0.8 382,277 + RR42_RS22485 0.67 -0.5 382,278 - RR42_RS22485 0.67 -0.1 382,322 + RR42_RS22485 0.72 -0.5 382,323 - RR42_RS22485 0.72 +0.7 382,356 - RR42_RS22485 0.75 +1.0 382,373 + RR42_RS22485 0.77 +1.3 382,374 - RR42_RS22485 0.77 +0.3 382,512 - -1.0 382,517 + +1.3 382,517 + +1.7 382,518 - +0.4 382,695 + -0.0 382,696 - +0.1 382,696 - +0.3 382,696 - +0.4 382,696 - -0.0 382,696 - -2.7 382,697 + +0.9 382,697 + +1.7 382,698 - +0.3 382,698 - -0.4 382,698 - -0.9 382,698 - -0.6 382,698 - +0.2 382,698 - -0.8 382,728 + +0.3 382,798 - +2.3 382,869 + +0.3 382,869 + +1.0 382,869 + -0.5 382,870 - +1.3 382,870 - +1.1 382,870 - +0.5 382,872 + -0.3 382,872 + -0.3 382,872 + +0.3 382,873 - -0.1 382,873 - +0.4 382,873 - +1.3 382,873 - -0.1 383,093 + RR42_RS22490 0.24 -0.4 383,093 + RR42_RS22490 0.24 -1.0 383,093 + RR42_RS22490 0.24 +0.1 383,093 + RR42_RS22490 0.24 +0.2 383,093 + RR42_RS22490 0.24 -0.7 383,094 - RR42_RS22490 0.24 +1.7 383,189 + RR42_RS22490 0.35 -0.9 383,189 + RR42_RS22490 0.35 -2.0 383,190 - RR42_RS22490 0.35 -2.2 383,190 - RR42_RS22490 0.35 -0.3 383,310 - RR42_RS22490 0.50 +1.7
Or see this region's nucleotide sequence