Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21355 and RR42_RS21360 overlap by 4 nucleotides RR42_RS21360 and RR42_RS21365 are separated by 19 nucleotides RR42_RS21365 and RR42_RS21370 are separated by 52 nucleotides
RR42_RS21355: RR42_RS21355 - ABC transporter permease, at 120,388 to 121,392
_RS21355
RR42_RS21360: RR42_RS21360 - ABC transporter permease, at 121,389 to 122,228
_RS21360
RR42_RS21365: RR42_RS21365 - ABC transporter ATP-binding protein, at 122,248 to 123,885
_RS21365
RR42_RS21370: RR42_RS21370 - 4-aminobutyrate aminotransferase, at 123,938 to 125,200
_RS21370
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 121.411 kb on - strand at 121.803 kb on + strand, within RR42_RS21360 at 121.804 kb on - strand, within RR42_RS21360 at 122.268 kb on - strand at 122.348 kb on - strand at 122.348 kb on - strand at 122.444 kb on - strand, within RR42_RS21365 at 122.709 kb on + strand, within RR42_RS21365 at 122.710 kb on - strand, within RR42_RS21365 at 122.714 kb on - strand, within RR42_RS21365 at 123.010 kb on + strand, within RR42_RS21365 at 123.396 kb on + strand, within RR42_RS21365 at 123.814 kb on + strand at 124.061 kb on + strand at 124.061 kb on + strand at 124.062 kb on - strand at 124.062 kb on - strand at 124.064 kb on - strand at 124.190 kb on + strand, within RR42_RS21370 at 124.190 kb on + strand, within RR42_RS21370 at 124.190 kb on + strand, within RR42_RS21370 at 124.190 kb on + strand, within RR42_RS21370 at 124.191 kb on - strand, within RR42_RS21370 at 124.191 kb on - strand, within RR42_RS21370 at 124.191 kb on - strand, within RR42_RS21370 at 124.191 kb on - strand, within RR42_RS21370 at 124.191 kb on - strand, within RR42_RS21370 at 124.390 kb on - strand, within RR42_RS21370 at 124.398 kb on - strand, within RR42_RS21370
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 121,411 - -0.4 121,803 + RR42_RS21360 0.49 -2.2 121,804 - RR42_RS21360 0.49 -0.9 122,268 - -0.2 122,348 - +0.0 122,348 - -1.0 122,444 - RR42_RS21365 0.12 +1.5 122,709 + RR42_RS21365 0.28 +0.2 122,710 - RR42_RS21365 0.28 +0.1 122,714 - RR42_RS21365 0.28 +0.8 123,010 + RR42_RS21365 0.47 -0.3 123,396 + RR42_RS21365 0.70 +0.0 123,814 + +1.9 124,061 + -1.0 124,061 + -0.7 124,062 - +0.4 124,062 - -0.8 124,064 - -1.1 124,190 + RR42_RS21370 0.20 +0.6 124,190 + RR42_RS21370 0.20 -0.4 124,190 + RR42_RS21370 0.20 +0.8 124,190 + RR42_RS21370 0.20 -1.0 124,191 - RR42_RS21370 0.20 -1.1 124,191 - RR42_RS21370 0.20 +0.4 124,191 - RR42_RS21370 0.20 -0.6 124,191 - RR42_RS21370 0.20 +0.4 124,191 - RR42_RS21370 0.20 -0.3 124,390 - RR42_RS21370 0.36 +0.5 124,398 - RR42_RS21370 0.36 -0.3
Or see this region's nucleotide sequence