Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20955 and RR42_RS20960 are separated by 889 nucleotides RR42_RS20960 and RR42_RS20965 are separated by 44 nucleotides
RR42_RS20955: RR42_RS20955 - LuxR family transcriptional regulator, at 28,248 to 29,189
_RS20955
RR42_RS20960: RR42_RS20960 - SAM-dependent methyltransferase, at 30,079 to 30,891
_RS20960
RR42_RS20965: RR42_RS20965 - transferase, at 30,936 to 32,123
_RS20965
Position (kb) 30
31 Strain fitness (log2 ratio) -2
-1
0
1
2 at 29.195 kb on + strand at 29.243 kb on + strand at 29.287 kb on + strand at 29.288 kb on - strand at 29.414 kb on + strand at 29.544 kb on - strand at 29.874 kb on - strand at 29.898 kb on - strand at 29.957 kb on + strand at 30.126 kb on + strand at 30.307 kb on + strand, within RR42_RS20960 at 30.307 kb on + strand, within RR42_RS20960 at 30.307 kb on + strand, within RR42_RS20960 at 30.307 kb on + strand, within RR42_RS20960 at 30.308 kb on - strand, within RR42_RS20960 at 30.308 kb on - strand, within RR42_RS20960 at 30.308 kb on - strand, within RR42_RS20960 at 30.354 kb on - strand, within RR42_RS20960 at 30.451 kb on + strand, within RR42_RS20960 at 30.452 kb on - strand, within RR42_RS20960 at 30.701 kb on - strand, within RR42_RS20960 at 30.751 kb on - strand, within RR42_RS20960 at 30.865 kb on + strand at 31.180 kb on - strand, within RR42_RS20965 at 31.438 kb on - strand, within RR42_RS20965 at 31.881 kb on - strand, within RR42_RS20965 at 31.881 kb on - strand, within RR42_RS20965
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 29,195 + -0.9 29,243 + -0.3 29,287 + -1.6 29,288 - +0.6 29,414 + +0.4 29,544 - +1.0 29,874 - -0.2 29,898 - +0.5 29,957 + +0.2 30,126 + -2.0 30,307 + RR42_RS20960 0.28 +0.6 30,307 + RR42_RS20960 0.28 -1.2 30,307 + RR42_RS20960 0.28 -1.4 30,307 + RR42_RS20960 0.28 +1.5 30,308 - RR42_RS20960 0.28 +0.6 30,308 - RR42_RS20960 0.28 +0.5 30,308 - RR42_RS20960 0.28 -1.1 30,354 - RR42_RS20960 0.34 +0.5 30,451 + RR42_RS20960 0.46 -0.4 30,452 - RR42_RS20960 0.46 -0.1 30,701 - RR42_RS20960 0.77 +1.4 30,751 - RR42_RS20960 0.83 +1.8 30,865 + +0.0 31,180 - RR42_RS20965 0.21 +0.1 31,438 - RR42_RS20965 0.42 -0.5 31,881 - RR42_RS20965 0.80 +0.6 31,881 - RR42_RS20965 0.80 +1.6
Or see this region's nucleotide sequence