Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16015

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16010 and RR42_RS16015 are separated by 324 nucleotidesRR42_RS16015 and RR42_RS16020 are separated by 323 nucleotides RR42_RS16010: RR42_RS16010 - ATP-binding protein, at 3,463,207 to 3,464,295 _RS16010 RR42_RS16015: RR42_RS16015 - membrane protein, at 3,464,620 to 3,465,252 _RS16015 RR42_RS16020: RR42_RS16020 - methionyl-tRNA synthetase, at 3,465,576 to 3,467,645 _RS16020 Position (kb) 3464 3465 3466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3464.315 kb on + strandat 3464.345 kb on - strandat 3464.352 kb on + strandat 3464.352 kb on + strandat 3464.353 kb on - strandat 3464.353 kb on - strandat 3464.353 kb on - strandat 3464.388 kb on - strandat 3464.426 kb on + strandat 3464.426 kb on + strandat 3464.436 kb on + strandat 3464.436 kb on + strandat 3464.437 kb on - strandat 3464.437 kb on - strandat 3464.482 kb on - strandat 3464.482 kb on - strandat 3464.482 kb on - strandat 3464.486 kb on + strandat 3464.487 kb on - strandat 3464.487 kb on - strandat 3464.487 kb on - strandat 3464.487 kb on - strandat 3464.487 kb on - strandat 3464.515 kb on + strandat 3464.515 kb on + strandat 3464.516 kb on - strandat 3464.533 kb on - strandat 3464.533 kb on - strandat 3464.558 kb on + strandat 3464.761 kb on - strand, within RR42_RS16015at 3464.818 kb on + strand, within RR42_RS16015at 3465.064 kb on + strand, within RR42_RS16015at 3465.064 kb on + strand, within RR42_RS16015at 3465.064 kb on + strand, within RR42_RS16015at 3465.064 kb on + strand, within RR42_RS16015at 3465.064 kb on + strand, within RR42_RS16015at 3465.065 kb on - strand, within RR42_RS16015at 3465.065 kb on - strand, within RR42_RS16015at 3465.065 kb on - strand, within RR42_RS16015at 3465.109 kb on + strand, within RR42_RS16015at 3465.109 kb on + strand, within RR42_RS16015at 3465.109 kb on + strand, within RR42_RS16015at 3465.109 kb on + strand, within RR42_RS16015at 3465.230 kb on - strandat 3465.262 kb on - strandat 3465.262 kb on - strandat 3465.396 kb on + strandat 3465.425 kb on + strandat 3465.488 kb on + strandat 3465.488 kb on + strandat 3465.489 kb on - strandat 3465.489 kb on - strandat 3465.489 kb on - strandat 3465.493 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,464,315 + -3.6
3,464,345 - +1.3
3,464,352 + +1.3
3,464,352 + -0.3
3,464,353 - -0.6
3,464,353 - +1.8
3,464,353 - +0.1
3,464,388 - -0.8
3,464,426 + -0.9
3,464,426 + -0.6
3,464,436 + +0.5
3,464,436 + +0.3
3,464,437 - -1.9
3,464,437 - -0.5
3,464,482 - +0.1
3,464,482 - -0.5
3,464,482 - +1.3
3,464,486 + +0.6
3,464,487 - -1.4
3,464,487 - -1.4
3,464,487 - +0.9
3,464,487 - -1.0
3,464,487 - -0.4
3,464,515 + +1.3
3,464,515 + -0.1
3,464,516 - +1.1
3,464,533 - -0.3
3,464,533 - -1.4
3,464,558 + +1.0
3,464,761 - RR42_RS16015 0.22 -2.7
3,464,818 + RR42_RS16015 0.31 -1.5
3,465,064 + RR42_RS16015 0.70 -0.5
3,465,064 + RR42_RS16015 0.70 -0.5
3,465,064 + RR42_RS16015 0.70 +1.0
3,465,064 + RR42_RS16015 0.70 -0.6
3,465,064 + RR42_RS16015 0.70 +0.9
3,465,065 - RR42_RS16015 0.70 -0.7
3,465,065 - RR42_RS16015 0.70 +2.3
3,465,065 - RR42_RS16015 0.70 -1.5
3,465,109 + RR42_RS16015 0.77 +0.2
3,465,109 + RR42_RS16015 0.77 -0.5
3,465,109 + RR42_RS16015 0.77 -0.7
3,465,109 + RR42_RS16015 0.77 +1.3
3,465,230 - -0.5
3,465,262 - +0.8
3,465,262 - -0.7
3,465,396 + +1.3
3,465,425 + +0.1
3,465,488 + -0.4
3,465,488 + +1.0
3,465,489 - -0.8
3,465,489 - -0.4
3,465,489 - -0.3
3,465,493 + -0.5

Or see this region's nucleotide sequence