Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13405 and RR42_RS13410 are separated by 395 nucleotides RR42_RS13410 and RR42_RS13415 are separated by 752 nucleotides
RR42_RS13405: RR42_RS13405 - diguanylate cyclase, at 2,891,557 to 2,892,774
_RS13405
RR42_RS13410: RR42_RS13410 - tRNA-Pro, at 2,893,170 to 2,893,246
_RS13410
RR42_RS13415: RR42_RS13415 - translation initiation factor IF-1, at 2,893,999 to 2,894,220
_RS13415
Position (kb)
2893
2894 Strain fitness (log2 ratio)
-2
-1
0
1 at 2892.266 kb on + strand, within RR42_RS13405 at 2892.266 kb on + strand, within RR42_RS13405 at 2892.267 kb on - strand, within RR42_RS13405 at 2892.267 kb on - strand, within RR42_RS13405 at 2892.267 kb on - strand, within RR42_RS13405 at 2892.267 kb on - strand, within RR42_RS13405 at 2892.386 kb on + strand, within RR42_RS13405 at 2892.386 kb on + strand, within RR42_RS13405 at 2892.386 kb on + strand, within RR42_RS13405 at 2892.386 kb on + strand, within RR42_RS13405 at 2892.386 kb on + strand, within RR42_RS13405 at 2892.387 kb on - strand, within RR42_RS13405 at 2892.387 kb on - strand, within RR42_RS13405 at 2892.390 kb on + strand, within RR42_RS13405 at 2892.390 kb on + strand, within RR42_RS13405 at 2892.450 kb on - strand, within RR42_RS13405 at 2892.533 kb on + strand, within RR42_RS13405 at 2892.534 kb on - strand, within RR42_RS13405 at 2892.534 kb on - strand, within RR42_RS13405 at 2892.586 kb on - strand, within RR42_RS13405 at 2892.586 kb on - strand, within RR42_RS13405 at 2892.602 kb on + strand, within RR42_RS13405 at 2892.602 kb on + strand, within RR42_RS13405 at 2892.603 kb on - strand, within RR42_RS13405 at 2892.603 kb on - strand, within RR42_RS13405 at 2892.736 kb on + strand at 2892.736 kb on + strand at 2892.756 kb on + strand at 2892.756 kb on + strand at 2892.757 kb on - strand at 2893.027 kb on + strand at 2893.063 kb on + strand at 2893.063 kb on + strand at 2893.253 kb on - strand at 2893.258 kb on + strand at 2893.384 kb on + strand at 2893.384 kb on + strand at 2893.385 kb on - strand at 2893.508 kb on - strand at 2893.559 kb on + strand at 2893.559 kb on + strand at 2893.559 kb on + strand at 2893.561 kb on + strand at 2893.584 kb on + strand at 2893.584 kb on + strand at 2893.708 kb on + strand at 2893.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,892,266 + RR42_RS13405 0.58 -0.5 2,892,266 + RR42_RS13405 0.58 -1.3 2,892,267 - RR42_RS13405 0.58 -0.9 2,892,267 - RR42_RS13405 0.58 +1.6 2,892,267 - RR42_RS13405 0.58 -1.3 2,892,267 - RR42_RS13405 0.58 +0.1 2,892,386 + RR42_RS13405 0.68 -1.1 2,892,386 + RR42_RS13405 0.68 +0.4 2,892,386 + RR42_RS13405 0.68 +0.2 2,892,386 + RR42_RS13405 0.68 -0.5 2,892,386 + RR42_RS13405 0.68 +1.4 2,892,387 - RR42_RS13405 0.68 -0.1 2,892,387 - RR42_RS13405 0.68 -0.2 2,892,390 + RR42_RS13405 0.68 +0.1 2,892,390 + RR42_RS13405 0.68 +1.1 2,892,450 - RR42_RS13405 0.73 -0.3 2,892,533 + RR42_RS13405 0.80 -0.2 2,892,534 - RR42_RS13405 0.80 -0.7 2,892,534 - RR42_RS13405 0.80 +0.1 2,892,586 - RR42_RS13405 0.84 +0.3 2,892,586 - RR42_RS13405 0.84 -0.6 2,892,602 + RR42_RS13405 0.86 +1.1 2,892,602 + RR42_RS13405 0.86 -1.0 2,892,603 - RR42_RS13405 0.86 -0.0 2,892,603 - RR42_RS13405 0.86 +0.2 2,892,736 + +1.5 2,892,736 + -2.0 2,892,756 + +1.3 2,892,756 + -0.8 2,892,757 - -0.9 2,893,027 + -1.1 2,893,063 + +1.1 2,893,063 + -0.0 2,893,253 - +1.1 2,893,258 + -0.3 2,893,384 + -1.6 2,893,384 + +1.1 2,893,385 - -0.4 2,893,508 - -0.3 2,893,559 + +1.5 2,893,559 + -0.2 2,893,559 + -0.9 2,893,561 + -0.6 2,893,584 + -0.8 2,893,584 + -1.4 2,893,708 + -2.0 2,893,960 + -0.3
Or see this region's nucleotide sequence