Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12770

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12765 and RR42_RS12770 are separated by 433 nucleotidesRR42_RS12770 and RR42_RS12775 are separated by 58 nucleotidesRR42_RS12775 and RR42_RS12780 are separated by 100 nucleotidesRR42_RS12780 and RR42_RS12785 are separated by 179 nucleotides RR42_RS12765: RR42_RS12765 - protein kinase, at 2,741,615 to 2,743,696 _RS12765 RR42_RS12770: RR42_RS12770 - hypothetical protein, at 2,744,130 to 2,744,387 _RS12770 RR42_RS12775: RR42_RS12775 - hypothetical protein, at 2,744,446 to 2,744,703 _RS12775 RR42_RS12780: RR42_RS12780 - hypothetical protein, at 2,744,804 to 2,745,067 _RS12780 RR42_RS12785: RR42_RS12785 - hypothetical protein, at 2,745,247 to 2,745,465 _RS12785 Position (kb) 2744 2745Strain fitness (log2 ratio) -2 -1 0 1at 2743.240 kb on - strand, within RR42_RS12765at 2743.240 kb on - strand, within RR42_RS12765at 2743.240 kb on - strand, within RR42_RS12765at 2743.287 kb on + strand, within RR42_RS12765at 2743.287 kb on + strand, within RR42_RS12765at 2743.348 kb on + strand, within RR42_RS12765at 2743.348 kb on + strand, within RR42_RS12765at 2743.527 kb on + strandat 2743.528 kb on - strandat 2743.669 kb on + strandat 2743.669 kb on + strandat 2743.673 kb on + strandat 2743.673 kb on + strandat 2743.673 kb on + strandat 2743.673 kb on + strandat 2743.674 kb on - strandat 2743.674 kb on - strandat 2743.764 kb on - strandat 2743.781 kb on - strandat 2743.781 kb on - strandat 2743.783 kb on + strandat 2743.874 kb on + strandat 2743.874 kb on + strandat 2743.875 kb on - strandat 2744.698 kb on + strandat 2745.157 kb on + strandat 2745.158 kb on - strandat 2745.158 kb on - strandat 2745.158 kb on - strandat 2745.158 kb on - strandat 2745.158 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,743,240 - RR42_RS12765 0.78 -2.0
2,743,240 - RR42_RS12765 0.78 +0.1
2,743,240 - RR42_RS12765 0.78 -0.3
2,743,287 + RR42_RS12765 0.80 -1.6
2,743,287 + RR42_RS12765 0.80 +0.3
2,743,348 + RR42_RS12765 0.83 +0.2
2,743,348 + RR42_RS12765 0.83 -1.2
2,743,527 + -0.9
2,743,528 - -1.0
2,743,669 + +0.8
2,743,669 + -0.1
2,743,673 + +0.0
2,743,673 + -0.3
2,743,673 + -0.6
2,743,673 + -1.6
2,743,674 - -0.9
2,743,674 - +0.3
2,743,764 - -1.2
2,743,781 - -0.4
2,743,781 - +1.5
2,743,783 + +0.9
2,743,874 + -0.8
2,743,874 + +0.5
2,743,875 - +0.2
2,744,698 + +0.2
2,745,157 + +1.4
2,745,158 - -1.3
2,745,158 - -2.3
2,745,158 - -0.7
2,745,158 - +1.4
2,745,158 - -0.3

Or see this region's nucleotide sequence