Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12015

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12010 and RR42_RS12015 are separated by 74 nucleotidesRR42_RS12015 and RR42_RS12020 are separated by 125 nucleotidesRR42_RS12020 and RR42_RS12025 are separated by 76 nucleotides RR42_RS12010: RR42_RS12010 - ABC transporter, at 2,574,309 to 2,576,249 _RS12010 RR42_RS12015: RR42_RS12015 - dihydrolipoamide acyltransferase, at 2,576,324 to 2,576,809 _RS12015 RR42_RS12020: RR42_RS12020 - GCN5 family acetyltransferase, at 2,576,935 to 2,577,471 _RS12020 RR42_RS12025: RR42_RS12025 - hypothetical protein, at 2,577,548 to 2,578,123 _RS12025 Position (kb) 2576 2577Strain fitness (log2 ratio) -2 -1 0 1at 2575.465 kb on - strand, within RR42_RS12010at 2576.124 kb on + strandat 2576.124 kb on + strandat 2576.124 kb on + strandat 2576.125 kb on - strandat 2576.125 kb on - strandat 2576.331 kb on + strandat 2576.332 kb on - strandat 2576.460 kb on + strand, within RR42_RS12015at 2576.460 kb on + strand, within RR42_RS12015at 2576.461 kb on - strand, within RR42_RS12015at 2576.818 kb on - strandat 2576.856 kb on - strandat 2576.856 kb on - strandat 2576.867 kb on + strandat 2576.867 kb on + strandat 2576.867 kb on + strandat 2576.868 kb on - strandat 2576.868 kb on - strandat 2577.158 kb on + strand, within RR42_RS12020at 2577.158 kb on + strand, within RR42_RS12020at 2577.158 kb on + strand, within RR42_RS12020at 2577.588 kb on + strandat 2577.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,575,465 - RR42_RS12010 0.60 -1.4
2,576,124 + -1.2
2,576,124 + -0.6
2,576,124 + -1.7
2,576,125 - -1.9
2,576,125 - +0.2
2,576,331 + -0.1
2,576,332 - +0.2
2,576,460 + RR42_RS12015 0.28 -0.6
2,576,460 + RR42_RS12015 0.28 -1.0
2,576,461 - RR42_RS12015 0.28 -1.6
2,576,818 - -0.8
2,576,856 - +0.5
2,576,856 - +1.1
2,576,867 + -1.0
2,576,867 + -1.1
2,576,867 + -1.8
2,576,868 - +0.6
2,576,868 - +0.3
2,577,158 + RR42_RS12020 0.42 -0.5
2,577,158 + RR42_RS12020 0.42 -0.2
2,577,158 + RR42_RS12020 0.42 +1.0
2,577,588 + -0.5
2,577,589 - -1.1

Or see this region's nucleotide sequence