Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09320

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09315 and RR42_RS09320 are separated by 22 nucleotidesRR42_RS09320 and RR42_RS09325 overlap by 4 nucleotidesRR42_RS09325 and RR42_RS09330 are separated by 55 nucleotides RR42_RS09315: RR42_RS09315 - MFS transporter, at 1,969,543 to 1,970,538 _RS09315 RR42_RS09320: RR42_RS09320 - long-chain fatty acid--CoA ligase, at 1,970,561 to 1,972,123 _RS09320 RR42_RS09325: RR42_RS09325 - citrate synthase, at 1,972,120 to 1,972,917 _RS09325 RR42_RS09330: RR42_RS09330 - 3-oxoacyl-ACP reductase, at 1,972,973 to 1,973,773 _RS09330 Position (kb) 1970 1971 1972 1973Strain fitness (log2 ratio) -2 -1 0 1 2at 1969.650 kb on + strand, within RR42_RS09315at 1969.650 kb on + strand, within RR42_RS09315at 1969.786 kb on - strand, within RR42_RS09315at 1969.837 kb on + strand, within RR42_RS09315at 1969.837 kb on + strand, within RR42_RS09315at 1969.838 kb on - strand, within RR42_RS09315at 1969.838 kb on - strand, within RR42_RS09315at 1969.838 kb on - strand, within RR42_RS09315at 1969.843 kb on + strand, within RR42_RS09315at 1969.843 kb on + strand, within RR42_RS09315at 1969.844 kb on - strand, within RR42_RS09315at 1969.877 kb on - strand, within RR42_RS09315at 1969.990 kb on + strand, within RR42_RS09315at 1969.990 kb on + strand, within RR42_RS09315at 1969.990 kb on + strand, within RR42_RS09315at 1969.991 kb on - strand, within RR42_RS09315at 1970.558 kb on - strandat 1970.558 kb on - strandat 1970.565 kb on - strandat 1970.565 kb on - strandat 1971.146 kb on + strand, within RR42_RS09320at 1971.147 kb on - strand, within RR42_RS09320at 1971.147 kb on - strand, within RR42_RS09320at 1971.311 kb on + strand, within RR42_RS09320at 1971.311 kb on + strand, within RR42_RS09320at 1971.311 kb on + strand, within RR42_RS09320at 1971.312 kb on - strand, within RR42_RS09320at 1971.374 kb on + strand, within RR42_RS09320at 1971.449 kb on + strand, within RR42_RS09320at 1971.728 kb on + strand, within RR42_RS09320at 1971.734 kb on + strand, within RR42_RS09320at 1971.735 kb on - strand, within RR42_RS09320at 1971.735 kb on - strand, within RR42_RS09320at 1971.735 kb on - strand, within RR42_RS09320at 1972.174 kb on - strandat 1972.363 kb on + strand, within RR42_RS09325at 1972.363 kb on + strand, within RR42_RS09325at 1972.364 kb on - strand, within RR42_RS09325at 1972.523 kb on - strand, within RR42_RS09325at 1972.591 kb on + strand, within RR42_RS09325at 1972.698 kb on + strand, within RR42_RS09325at 1972.698 kb on + strand, within RR42_RS09325at 1972.699 kb on - strand, within RR42_RS09325at 1972.877 kb on - strandat 1973.066 kb on + strand, within RR42_RS09330

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,969,650 + RR42_RS09315 0.11 +0.1
1,969,650 + RR42_RS09315 0.11 +0.3
1,969,786 - RR42_RS09315 0.24 -2.1
1,969,837 + RR42_RS09315 0.30 +1.7
1,969,837 + RR42_RS09315 0.30 +0.4
1,969,838 - RR42_RS09315 0.30 +0.2
1,969,838 - RR42_RS09315 0.30 +0.3
1,969,838 - RR42_RS09315 0.30 +0.2
1,969,843 + RR42_RS09315 0.30 +1.6
1,969,843 + RR42_RS09315 0.30 -0.7
1,969,844 - RR42_RS09315 0.30 +0.3
1,969,877 - RR42_RS09315 0.34 +0.7
1,969,990 + RR42_RS09315 0.45 +1.0
1,969,990 + RR42_RS09315 0.45 -1.5
1,969,990 + RR42_RS09315 0.45 +0.3
1,969,991 - RR42_RS09315 0.45 +0.4
1,970,558 - -0.4
1,970,558 - -0.5
1,970,565 - +0.2
1,970,565 - +1.8
1,971,146 + RR42_RS09320 0.37 -0.3
1,971,147 - RR42_RS09320 0.37 -0.5
1,971,147 - RR42_RS09320 0.37 +1.2
1,971,311 + RR42_RS09320 0.48 -0.2
1,971,311 + RR42_RS09320 0.48 +0.6
1,971,311 + RR42_RS09320 0.48 -1.2
1,971,312 - RR42_RS09320 0.48 +1.0
1,971,374 + RR42_RS09320 0.52 -0.3
1,971,449 + RR42_RS09320 0.57 -0.8
1,971,728 + RR42_RS09320 0.75 -0.6
1,971,734 + RR42_RS09320 0.75 +1.6
1,971,735 - RR42_RS09320 0.75 -1.5
1,971,735 - RR42_RS09320 0.75 -1.1
1,971,735 - RR42_RS09320 0.75 +0.4
1,972,174 - -1.2
1,972,363 + RR42_RS09325 0.30 -0.9
1,972,363 + RR42_RS09325 0.30 -1.2
1,972,364 - RR42_RS09325 0.31 -0.0
1,972,523 - RR42_RS09325 0.51 -0.1
1,972,591 + RR42_RS09325 0.59 -1.4
1,972,698 + RR42_RS09325 0.72 -1.8
1,972,698 + RR42_RS09325 0.72 +0.2
1,972,699 - RR42_RS09325 0.73 +1.8
1,972,877 - -0.2
1,973,066 + RR42_RS09330 0.12 -0.4

Or see this region's nucleotide sequence