Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09090

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09080 and RR42_RS09085 overlap by 1 nucleotidesRR42_RS09085 and RR42_RS09090 are separated by 223 nucleotidesRR42_RS09090 and RR42_RS09095 are separated by 150 nucleotides RR42_RS09080: RR42_RS09080 - C4-dicarboxylate ABC transporter permease, at 1,910,423 to 1,911,733 _RS09080 RR42_RS09085: RR42_RS09085 - C4-dicarboxylate ABC transporter permease, at 1,911,733 to 1,912,284 _RS09085 RR42_RS09090: RR42_RS09090 - C4-dicarboxylate ABC transporter substrate-binding protein, at 1,912,508 to 1,913,467 _RS09090 RR42_RS09095: RR42_RS09095 - amidase, at 1,913,618 to 1,914,961 _RS09095 Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -3 -2 -1 0 1at 1911.516 kb on - strand, within RR42_RS09080at 1911.516 kb on - strand, within RR42_RS09080at 1911.516 kb on - strand, within RR42_RS09080at 1911.557 kb on - strand, within RR42_RS09080at 1912.094 kb on - strand, within RR42_RS09085at 1912.152 kb on + strand, within RR42_RS09085at 1912.392 kb on + strandat 1912.393 kb on - strandat 1912.413 kb on + strandat 1912.425 kb on + strandat 1912.461 kb on + strandat 1912.474 kb on - strandat 1912.519 kb on - strandat 1912.663 kb on - strand, within RR42_RS09090at 1912.815 kb on + strand, within RR42_RS09090at 1912.815 kb on + strand, within RR42_RS09090at 1912.816 kb on - strand, within RR42_RS09090at 1912.980 kb on + strand, within RR42_RS09090at 1912.980 kb on + strand, within RR42_RS09090at 1912.981 kb on - strand, within RR42_RS09090at 1912.981 kb on - strand, within RR42_RS09090at 1912.981 kb on - strand, within RR42_RS09090at 1913.038 kb on - strand, within RR42_RS09090at 1913.068 kb on - strand, within RR42_RS09090at 1913.068 kb on - strand, within RR42_RS09090at 1913.136 kb on + strand, within RR42_RS09090at 1913.136 kb on + strand, within RR42_RS09090at 1913.137 kb on - strand, within RR42_RS09090at 1913.137 kb on - strand, within RR42_RS09090at 1913.148 kb on + strand, within RR42_RS09090at 1913.186 kb on + strand, within RR42_RS09090at 1913.779 kb on + strand, within RR42_RS09095at 1913.779 kb on + strand, within RR42_RS09095at 1913.950 kb on - strand, within RR42_RS09095at 1913.950 kb on - strand, within RR42_RS09095at 1913.950 kb on - strand, within RR42_RS09095at 1914.007 kb on - strand, within RR42_RS09095at 1914.341 kb on - strand, within RR42_RS09095at 1914.342 kb on + strand, within RR42_RS09095at 1914.342 kb on + strand, within RR42_RS09095at 1914.342 kb on + strand, within RR42_RS09095

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,911,516 - RR42_RS09080 0.83 -1.3
1,911,516 - RR42_RS09080 0.83 +1.2
1,911,516 - RR42_RS09080 0.83 +0.2
1,911,557 - RR42_RS09080 0.86 -0.1
1,912,094 - RR42_RS09085 0.65 +0.3
1,912,152 + RR42_RS09085 0.76 -1.0
1,912,392 + -0.2
1,912,393 - -1.1
1,912,413 + +0.3
1,912,425 + +1.0
1,912,461 + -0.4
1,912,474 - -2.9
1,912,519 - -1.3
1,912,663 - RR42_RS09090 0.16 +1.0
1,912,815 + RR42_RS09090 0.32 -0.4
1,912,815 + RR42_RS09090 0.32 -1.3
1,912,816 - RR42_RS09090 0.32 -1.3
1,912,980 + RR42_RS09090 0.49 -0.4
1,912,980 + RR42_RS09090 0.49 -0.2
1,912,981 - RR42_RS09090 0.49 +1.4
1,912,981 - RR42_RS09090 0.49 -1.2
1,912,981 - RR42_RS09090 0.49 +0.1
1,913,038 - RR42_RS09090 0.55 +0.3
1,913,068 - RR42_RS09090 0.58 -0.2
1,913,068 - RR42_RS09090 0.58 -0.2
1,913,136 + RR42_RS09090 0.65 -0.2
1,913,136 + RR42_RS09090 0.65 -1.0
1,913,137 - RR42_RS09090 0.66 +0.8
1,913,137 - RR42_RS09090 0.66 -0.4
1,913,148 + RR42_RS09090 0.67 -0.0
1,913,186 + RR42_RS09090 0.71 -0.4
1,913,779 + RR42_RS09095 0.12 -0.0
1,913,779 + RR42_RS09095 0.12 -0.6
1,913,950 - RR42_RS09095 0.25 -1.0
1,913,950 - RR42_RS09095 0.25 +1.0
1,913,950 - RR42_RS09095 0.25 -0.7
1,914,007 - RR42_RS09095 0.29 +0.3
1,914,341 - RR42_RS09095 0.54 -0.4
1,914,342 + RR42_RS09095 0.54 -1.9
1,914,342 + RR42_RS09095 0.54 -1.1
1,914,342 + RR42_RS09095 0.54 -1.2

Or see this region's nucleotide sequence