Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04390

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04385 and RR42_RS04390 are separated by 104 nucleotidesRR42_RS04390 and RR42_RS04395 are separated by 167 nucleotidesRR42_RS04395 and RR42_RS04400 are separated by 30 nucleotides RR42_RS04385: RR42_RS04385 - amino acid dehydrogenase, at 975,678 to 976,940 _RS04385 RR42_RS04390: RR42_RS04390 - ABC transporter, at 977,045 to 977,965 _RS04390 RR42_RS04395: RR42_RS04395 - cysteine ABC transporter substrate-binding protein, at 978,133 to 978,930 _RS04395 RR42_RS04400: RR42_RS04400 - ABC transporter permease, at 978,961 to 979,620 _RS04400 Position (kb) 977 978Strain fitness (log2 ratio) -1 0 1 2at 976.144 kb on - strand, within RR42_RS04385at 976.394 kb on + strandat 976.394 kb on + strand, within RR42_RS04385at 976.395 kb on - strand, within RR42_RS04385at 976.506 kb on + strand, within RR42_RS04385at 976.506 kb on + strand, within RR42_RS04385at 976.507 kb on - strand, within RR42_RS04385at 976.585 kb on - strand, within RR42_RS04385at 976.585 kb on - strand, within RR42_RS04385at 976.977 kb on - strandat 977.011 kb on - strandat 977.044 kb on + strandat 977.152 kb on + strand, within RR42_RS04390at 977.152 kb on + strand, within RR42_RS04390at 977.222 kb on + strand, within RR42_RS04390at 977.222 kb on + strand, within RR42_RS04390at 977.223 kb on - strand, within RR42_RS04390at 977.224 kb on + strand, within RR42_RS04390at 977.250 kb on - strand, within RR42_RS04390at 977.317 kb on + strand, within RR42_RS04390at 977.684 kb on + strand, within RR42_RS04390at 977.684 kb on + strand, within RR42_RS04390at 977.757 kb on - strand, within RR42_RS04390at 977.757 kb on - strand, within RR42_RS04390at 977.757 kb on - strand, within RR42_RS04390at 977.852 kb on + strand, within RR42_RS04390at 977.853 kb on - strand, within RR42_RS04390at 977.853 kb on - strand, within RR42_RS04390at 977.903 kb on + strandat 977.933 kb on + strandat 977.933 kb on + strandat 977.944 kb on + strandat 977.964 kb on - strandat 978.035 kb on + strandat 978.132 kb on + strandat 978.132 kb on + strandat 978.133 kb on - strandat 978.133 kb on - strandat 978.133 kb on - strandat 978.230 kb on + strand, within RR42_RS04395at 978.272 kb on - strand, within RR42_RS04395at 978.272 kb on - strand, within RR42_RS04395at 978.272 kb on - strand, within RR42_RS04395at 978.272 kb on - strand, within RR42_RS04395at 978.287 kb on - strand, within RR42_RS04395at 978.490 kb on + strand, within RR42_RS04395at 978.490 kb on + strand, within RR42_RS04395at 978.491 kb on - strand, within RR42_RS04395at 978.497 kb on - strand, within RR42_RS04395at 978.598 kb on + strand, within RR42_RS04395at 978.599 kb on - strand, within RR42_RS04395at 978.599 kb on - strand, within RR42_RS04395at 978.661 kb on + strand, within RR42_RS04395

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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976,144 - RR42_RS04385 0.37 +0.7
976,394 + +0.3
976,394 + RR42_RS04385 0.57 +0.4
976,395 - RR42_RS04385 0.57 +0.3
976,506 + RR42_RS04385 0.66 +0.3
976,506 + RR42_RS04385 0.66 +0.5
976,507 - RR42_RS04385 0.66 +0.9
976,585 - RR42_RS04385 0.72 +0.3
976,585 - RR42_RS04385 0.72 -0.3
976,977 - +0.1
977,011 - +0.8
977,044 + +0.4
977,152 + RR42_RS04390 0.12 -1.2
977,152 + RR42_RS04390 0.12 -1.0
977,222 + RR42_RS04390 0.19 +0.5
977,222 + RR42_RS04390 0.19 +2.3
977,223 - RR42_RS04390 0.19 +0.2
977,224 + RR42_RS04390 0.19 +1.6
977,250 - RR42_RS04390 0.22 +0.1
977,317 + RR42_RS04390 0.30 +1.3
977,684 + RR42_RS04390 0.69 +1.5
977,684 + RR42_RS04390 0.69 -1.0
977,757 - RR42_RS04390 0.77 -0.8
977,757 - RR42_RS04390 0.77 +0.8
977,757 - RR42_RS04390 0.77 -1.3
977,852 + RR42_RS04390 0.88 -1.4
977,853 - RR42_RS04390 0.88 +0.2
977,853 - RR42_RS04390 0.88 -0.5
977,903 + +0.9
977,933 + +1.0
977,933 + +0.1
977,944 + -0.1
977,964 - +0.8
978,035 + +0.6
978,132 + -0.7
978,132 + +0.9
978,133 - -0.5
978,133 - +0.5
978,133 - -0.2
978,230 + RR42_RS04395 0.12 -1.1
978,272 - RR42_RS04395 0.17 -0.5
978,272 - RR42_RS04395 0.17 +0.4
978,272 - RR42_RS04395 0.17 -1.3
978,272 - RR42_RS04395 0.17 +0.8
978,287 - RR42_RS04395 0.19 -0.0
978,490 + RR42_RS04395 0.45 -1.1
978,490 + RR42_RS04395 0.45 -1.2
978,491 - RR42_RS04395 0.45 -0.3
978,497 - RR42_RS04395 0.46 -0.4
978,598 + RR42_RS04395 0.58 -1.3
978,599 - RR42_RS04395 0.58 -0.8
978,599 - RR42_RS04395 0.58 -0.4
978,661 + RR42_RS04395 0.66 +0.3

Or see this region's nucleotide sequence