Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01820 and RR42_RS01825 are separated by 161 nucleotides RR42_RS01825 and RR42_RS01830 are separated by 140 nucleotides RR42_RS01830 and RR42_RS01835 are separated by 118 nucleotides
RR42_RS01820: RR42_RS01820 - peptidase S41, at 413,123 to 414,712
_RS01820
RR42_RS01825: RR42_RS01825 - phosphoglyceromutase, at 414,874 to 415,620
_RS01825
RR42_RS01830: RR42_RS01830 - sulfurtransferase, at 415,761 to 416,174
_RS01830
RR42_RS01835: RR42_RS01835 - glutaredoxin, at 416,293 to 416,550
_RS01835
Position (kb) 414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 413.887 kb on - strand, within RR42_RS01820 at 414.211 kb on - strand, within RR42_RS01820 at 414.211 kb on - strand, within RR42_RS01820 at 414.211 kb on - strand, within RR42_RS01820 at 414.550 kb on - strand, within RR42_RS01820 at 414.550 kb on - strand, within RR42_RS01820 at 414.680 kb on - strand at 414.793 kb on - strand at 414.793 kb on - strand at 414.793 kb on - strand at 414.793 kb on - strand at 414.793 kb on - strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 415.664 kb on - strand at 415.685 kb on - strand at 415.725 kb on + strand at 415.725 kb on + strand at 415.726 kb on - strand at 415.726 kb on - strand at 415.727 kb on + strand at 415.727 kb on + strand at 415.728 kb on - strand at 415.780 kb on - strand at 415.780 kb on - strand at 415.944 kb on + strand, within RR42_RS01830 at 415.944 kb on + strand, within RR42_RS01830 at 415.945 kb on - strand, within RR42_RS01830 at 416.103 kb on + strand, within RR42_RS01830 at 416.104 kb on - strand, within RR42_RS01830 at 416.116 kb on - strand, within RR42_RS01830 at 416.116 kb on - strand, within RR42_RS01830 at 416.172 kb on + strand at 416.173 kb on - strand at 416.173 kb on - strand at 416.306 kb on + strand at 416.306 kb on + strand at 416.306 kb on + strand at 416.306 kb on + strand at 416.306 kb on + strand at 416.306 kb on + strand at 416.307 kb on - strand at 416.311 kb on + strand at 416.312 kb on - strand at 416.321 kb on + strand, within RR42_RS01835 at 416.321 kb on + strand, within RR42_RS01835 at 416.322 kb on - strand, within RR42_RS01835 at 416.322 kb on - strand, within RR42_RS01835 at 416.464 kb on + strand, within RR42_RS01835 at 416.464 kb on + strand, within RR42_RS01835 at 416.596 kb on + strand at 416.596 kb on + strand at 416.596 kb on + strand at 416.597 kb on - strand at 416.597 kb on - strand at 416.597 kb on - strand at 416.597 kb on - strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.603 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 413,887 - RR42_RS01820 0.48 -0.5 414,211 - RR42_RS01820 0.68 -2.4 414,211 - RR42_RS01820 0.68 -1.0 414,211 - RR42_RS01820 0.68 -1.3 414,550 - RR42_RS01820 0.90 -1.2 414,550 - RR42_RS01820 0.90 -0.8 414,680 - -2.0 414,793 - -0.3 414,793 - +0.3 414,793 - +0.7 414,793 - +0.1 414,793 - +0.6 414,794 + +0.2 414,794 + +1.7 414,794 + -0.8 414,794 + -0.4 414,794 + +0.1 414,794 + +1.8 414,794 + -0.5 414,794 + -1.2 414,795 - -0.1 414,795 - -0.4 414,795 - -0.5 414,795 - +0.6 414,795 - -1.9 414,795 - -1.1 414,795 - +0.4 414,795 - -1.1 415,664 - -0.9 415,685 - -0.1 415,725 + -1.0 415,725 + +0.6 415,726 - +1.5 415,726 - -0.2 415,727 + -0.5 415,727 + -1.1 415,728 - -0.7 415,780 - -0.4 415,780 - +1.5 415,944 + RR42_RS01830 0.44 -0.2 415,944 + RR42_RS01830 0.44 -0.9 415,945 - RR42_RS01830 0.44 -0.2 416,103 + RR42_RS01830 0.83 -2.0 416,104 - RR42_RS01830 0.83 -0.4 416,116 - RR42_RS01830 0.86 -1.4 416,116 - RR42_RS01830 0.86 -0.3 416,172 + +0.4 416,173 - +0.4 416,173 - -1.2 416,306 + +0.1 416,306 + +0.0 416,306 + +1.2 416,306 + -1.2 416,306 + +1.2 416,306 + -1.0 416,307 - -1.5 416,311 + -1.1 416,312 - +0.7 416,321 + RR42_RS01835 0.11 -0.5 416,321 + RR42_RS01835 0.11 -0.3 416,322 - RR42_RS01835 0.11 -0.1 416,322 - RR42_RS01835 0.11 -0.2 416,464 + RR42_RS01835 0.66 +0.5 416,464 + RR42_RS01835 0.66 -0.5 416,596 + -0.4 416,596 + -0.2 416,596 + -0.6 416,597 - -1.7 416,597 - +0.3 416,597 - -1.9 416,597 - -0.9 416,601 + +1.0 416,601 + -0.3 416,601 + +0.2 416,601 + +0.2 416,601 + +1.5 416,601 + +0.3 416,601 + -0.5 416,603 + +1.9
Or see this region's nucleotide sequence