Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08370

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08365 and MMP_RS08370 are separated by 25 nucleotidesMMP_RS08370 and MMP_RS08375 are separated by 152 nucleotides MMP_RS08365: MMP_RS08365 - energy conserving hydrogenase EhbF, at 1,570,763 to 1,572,211 _RS08365 MMP_RS08370: MMP_RS08370 - cation:proton antiporter subunit C, at 1,572,237 to 1,572,593 _RS08370 MMP_RS08375: MMP_RS08375 - ATP-binding cassette domain-containing protein, at 1,572,746 to 1,574,395 _RS08375 Position (kb) 1572 1573Strain fitness (log2 ratio) -1 0 1at 1571.549 kb on - strand, within MMP_RS08365at 1571.618 kb on - strand, within MMP_RS08365at 1571.618 kb on - strand, within MMP_RS08365at 1571.618 kb on - strand, within MMP_RS08365at 1571.882 kb on - strand, within MMP_RS08365at 1572.004 kb on + strand, within MMP_RS08365at 1572.111 kb on + strandat 1572.292 kb on + strand, within MMP_RS08370at 1572.667 kb on - strandat 1572.697 kb on - strandat 1572.697 kb on - strandat 1572.698 kb on + strandat 1572.699 kb on - strandat 1572.700 kb on + strandat 1572.700 kb on + strandat 1572.700 kb on + strandat 1572.701 kb on - strandat 1572.714 kb on + strandat 1573.215 kb on + strandat 1573.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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1,571,549 - MMP_RS08365 0.54 +0.3
1,571,618 - MMP_RS08365 0.59 -0.1
1,571,618 - MMP_RS08365 0.59 -0.6
1,571,618 - MMP_RS08365 0.59 +0.0
1,571,882 - MMP_RS08365 0.77 +0.1
1,572,004 + MMP_RS08365 0.86 -0.2
1,572,111 + -0.6
1,572,292 + MMP_RS08370 0.15 -0.4
1,572,667 - -0.6
1,572,697 - -0.7
1,572,697 - -0.8
1,572,698 + -0.0
1,572,699 - +0.1
1,572,700 + -0.2
1,572,700 + -1.3
1,572,700 + +0.6
1,572,701 - -0.3
1,572,714 + -0.8
1,573,215 + +1.0
1,573,472 - -0.1

Or see this region's nucleotide sequence