Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07820

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07810 and MMP_RS07815 are separated by 26 nucleotidesMMP_RS07815 and MMP_RS07820 are separated by 9 nucleotidesMMP_RS07820 and MMP_RS07825 are separated by 51 nucleotides MMP_RS07810: MMP_RS07810 - hydrogenase nickel incorporation protein HypB, at 1,479,677 to 1,480,351 _RS07810 MMP_RS07815: MMP_RS07815 - DUF2120 domain-containing protein, at 1,480,378 to 1,480,797 _RS07815 MMP_RS07820: MMP_RS07820 - UPF0104 family protein, at 1,480,807 to 1,481,829 _RS07820 MMP_RS07825: MMP_RS07825 - preprotein translocase subunit SecD, at 1,481,881 to 1,483,047 _RS07825 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -1 0 1at 1480.003 kb on + strandat 1480.182 kb on - strandat 1480.276 kb on + strandat 1480.316 kb on + strandat 1480.336 kb on + strandat 1480.353 kb on - strandat 1480.355 kb on - strandat 1480.358 kb on + strandat 1480.358 kb on + strandat 1480.699 kb on - strand, within MMP_RS07815at 1480.780 kb on - strandat 1480.780 kb on - strandat 1480.780 kb on - strandat 1480.786 kb on - strandat 1480.797 kb on - strandat 1480.809 kb on + strandat 1480.823 kb on - strandat 1480.958 kb on - strand, within MMP_RS07820at 1481.109 kb on - strand, within MMP_RS07820at 1481.209 kb on + strand, within MMP_RS07820at 1481.231 kb on + strand, within MMP_RS07820at 1481.399 kb on + strand, within MMP_RS07820at 1481.551 kb on - strand, within MMP_RS07820at 1481.668 kb on - strand, within MMP_RS07820at 1481.744 kb on + strandat 1481.758 kb on + strandat 1481.850 kb on - strandat 1481.851 kb on + strandat 1481.851 kb on + strandat 1481.851 kb on + strandat 1481.860 kb on + strandat 1481.860 kb on + strandat 1481.882 kb on - strandat 1481.882 kb on - strandat 1481.883 kb on + strandat 1481.883 kb on + strandat 1481.893 kb on - strandat 1481.897 kb on - strandat 1481.898 kb on + strandat 1481.898 kb on + strandat 1481.903 kb on + strandat 1482.259 kb on - strandat 1482.388 kb on + strandat 1482.503 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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1,480,003 + -0.3
1,480,182 - -0.3
1,480,276 + +0.7
1,480,316 + -0.3
1,480,336 + -0.0
1,480,353 - +0.0
1,480,355 - -0.2
1,480,358 + -0.1
1,480,358 + -0.2
1,480,699 - MMP_RS07815 0.76 +0.1
1,480,780 - -0.2
1,480,780 - +0.1
1,480,780 - -0.0
1,480,786 - +0.1
1,480,797 - -0.8
1,480,809 + +0.1
1,480,823 - -0.4
1,480,958 - MMP_RS07820 0.15 -0.2
1,481,109 - MMP_RS07820 0.30 -1.0
1,481,209 + MMP_RS07820 0.39 -0.2
1,481,231 + MMP_RS07820 0.41 -0.6
1,481,399 + MMP_RS07820 0.58 -0.5
1,481,551 - MMP_RS07820 0.73 -0.1
1,481,668 - MMP_RS07820 0.84 +0.3
1,481,744 + +0.0
1,481,758 + -0.0
1,481,850 - +0.2
1,481,851 + +0.1
1,481,851 + -1.1
1,481,851 + -0.3
1,481,860 + -0.4
1,481,860 + -0.3
1,481,882 - -0.2
1,481,882 - +0.0
1,481,883 + -0.1
1,481,883 + +0.9
1,481,893 - +0.2
1,481,897 - +0.5
1,481,898 + +0.3
1,481,898 + +0.2
1,481,903 + -0.2
1,482,259 - +1.2
1,482,388 + -0.4
1,482,503 + +0.3

Or see this region's nucleotide sequence