Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05980

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05965 and MMP_RS05970 are separated by 13 nucleotidesMMP_RS05970 and MMP_RS05975 are separated by 20 nucleotidesMMP_RS05975 and MMP_RS05980 are separated by 22 nucleotidesMMP_RS05980 and MMP_RS05985 are separated by 18 nucleotidesMMP_RS05985 and MMP_RS05990 are separated by 35 nucleotidesMMP_RS05990 and MMP_RS05995 are separated by 38 nucleotides MMP_RS05965: MMP_RS05965 - carboxymuconolactone decarboxylase family protein, at 1,144,326 to 1,144,640 _RS05965 MMP_RS05970: MMP_RS05970 - class II SORL domain-containing protein, at 1,144,654 to 1,145,010 _RS05970 MMP_RS05975: MMP_RS05975 - hypothetical protein, at 1,145,031 to 1,145,297 _RS05975 MMP_RS05980: MMP_RS05980 - ferritin, at 1,145,320 to 1,145,835 _RS05980 MMP_RS05985: MMP_RS05985 - hypothetical protein, at 1,145,854 to 1,146,042 _RS05985 MMP_RS05990: MMP_RS05990 - DsrE family protein, at 1,146,078 to 1,146,428 _RS05990 MMP_RS05995: MMP_RS05995 - FprA family A-type flavoprotein, at 1,146,467 to 1,147,630 _RS05995 Position (kb) 1145 1146Strain fitness (log2 ratio) -1 0 1at 1144.544 kb on + strand, within MMP_RS05965at 1144.580 kb on + strand, within MMP_RS05965at 1144.580 kb on + strand, within MMP_RS05965at 1144.653 kb on + strandat 1144.785 kb on + strand, within MMP_RS05970at 1144.829 kb on - strand, within MMP_RS05970at 1144.830 kb on + strand, within MMP_RS05970at 1144.853 kb on - strand, within MMP_RS05970at 1145.108 kb on - strand, within MMP_RS05975at 1145.288 kb on - strandat 1145.292 kb on + strandat 1145.303 kb on + strandat 1145.319 kb on - strandat 1145.319 kb on - strandat 1145.320 kb on + strandat 1145.357 kb on - strandat 1145.357 kb on - strandat 1145.357 kb on - strandat 1145.358 kb on + strandat 1145.358 kb on + strandat 1145.362 kb on + strandat 1145.380 kb on - strand, within MMP_RS05980at 1145.380 kb on - strand, within MMP_RS05980at 1145.447 kb on - strand, within MMP_RS05980at 1145.539 kb on + strand, within MMP_RS05980at 1145.567 kb on - strand, within MMP_RS05980at 1145.568 kb on + strand, within MMP_RS05980at 1145.568 kb on + strand, within MMP_RS05980at 1145.635 kb on + strand, within MMP_RS05980at 1145.648 kb on - strand, within MMP_RS05980at 1145.676 kb on + strand, within MMP_RS05980at 1145.688 kb on + strand, within MMP_RS05980at 1145.745 kb on + strand, within MMP_RS05980at 1145.765 kb on + strand, within MMP_RS05980at 1145.765 kb on + strand, within MMP_RS05980at 1145.765 kb on + strand, within MMP_RS05980at 1145.843 kb on + strandat 1145.859 kb on + strandat 1145.961 kb on + strand, within MMP_RS05985at 1145.961 kb on + strand, within MMP_RS05985at 1145.961 kb on + strand, within MMP_RS05985at 1146.039 kb on + strandat 1146.041 kb on + strandat 1146.052 kb on - strandat 1146.053 kb on + strandat 1146.073 kb on - strandat 1146.105 kb on - strandat 1146.292 kb on - strand, within MMP_RS05990at 1146.312 kb on + strand, within MMP_RS05990at 1146.335 kb on - strand, within MMP_RS05990at 1146.350 kb on + strand, within MMP_RS05990at 1146.377 kb on - strand, within MMP_RS05990at 1146.432 kb on - strandat 1146.435 kb on - strandat 1146.435 kb on - strandat 1146.461 kb on - strandat 1146.462 kb on + strandat 1146.573 kb on + strandat 1146.578 kb on + strandat 1146.603 kb on - strand, within MMP_RS05995at 1146.760 kb on + strand, within MMP_RS05995at 1146.797 kb on - strand, within MMP_RS05995at 1146.798 kb on + strand, within MMP_RS05995at 1146.820 kb on - strand, within MMP_RS05995at 1146.823 kb on + strand, within MMP_RS05995

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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1,144,544 + MMP_RS05965 0.69 +0.3
1,144,580 + MMP_RS05965 0.81 +0.7
1,144,580 + MMP_RS05965 0.81 -0.1
1,144,653 + -0.2
1,144,785 + MMP_RS05970 0.37 -0.1
1,144,829 - MMP_RS05970 0.49 +0.8
1,144,830 + MMP_RS05970 0.49 -0.5
1,144,853 - MMP_RS05970 0.56 -0.3
1,145,108 - MMP_RS05975 0.29 +0.0
1,145,288 - -0.2
1,145,292 + -0.0
1,145,303 + +0.2
1,145,319 - -0.5
1,145,319 - +0.2
1,145,320 + -0.3
1,145,357 - +0.6
1,145,357 - +0.8
1,145,357 - -0.5
1,145,358 + -0.3
1,145,358 + +0.5
1,145,362 + +0.2
1,145,380 - MMP_RS05980 0.12 -0.1
1,145,380 - MMP_RS05980 0.12 -0.2
1,145,447 - MMP_RS05980 0.25 -0.4
1,145,539 + MMP_RS05980 0.42 +0.2
1,145,567 - MMP_RS05980 0.48 -0.3
1,145,568 + MMP_RS05980 0.48 -0.8
1,145,568 + MMP_RS05980 0.48 -0.4
1,145,635 + MMP_RS05980 0.61 -0.2
1,145,648 - MMP_RS05980 0.64 -0.1
1,145,676 + MMP_RS05980 0.69 -0.2
1,145,688 + MMP_RS05980 0.71 -0.4
1,145,745 + MMP_RS05980 0.82 +0.6
1,145,765 + MMP_RS05980 0.86 -0.3
1,145,765 + MMP_RS05980 0.86 -0.4
1,145,765 + MMP_RS05980 0.86 +0.2
1,145,843 + -0.1
1,145,859 + -0.2
1,145,961 + MMP_RS05985 0.57 -0.4
1,145,961 + MMP_RS05985 0.57 +0.3
1,145,961 + MMP_RS05985 0.57 +0.5
1,146,039 + -0.3
1,146,041 + -0.3
1,146,052 - -0.1
1,146,053 + +0.8
1,146,073 - -0.5
1,146,105 - +0.3
1,146,292 - MMP_RS05990 0.61 +0.1
1,146,312 + MMP_RS05990 0.67 +0.3
1,146,335 - MMP_RS05990 0.73 -0.4
1,146,350 + MMP_RS05990 0.77 -0.3
1,146,377 - MMP_RS05990 0.85 -0.4
1,146,432 - -0.3
1,146,435 - +0.2
1,146,435 - +0.5
1,146,461 - +0.7
1,146,462 + -0.1
1,146,573 + -0.4
1,146,578 + -0.1
1,146,603 - MMP_RS05995 0.12 -0.3
1,146,760 + MMP_RS05995 0.25 -0.2
1,146,797 - MMP_RS05995 0.28 -0.1
1,146,798 + MMP_RS05995 0.28 +0.3
1,146,820 - MMP_RS05995 0.30 -1.5
1,146,823 + MMP_RS05995 0.31 +0.4

Or see this region's nucleotide sequence