Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04715

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04705 and MMP_RS04710 are separated by 29 nucleotidesMMP_RS04710 and MMP_RS04715 are separated by 185 nucleotidesMMP_RS04715 and MMP_RS04720 are separated by 14 nucleotidesMMP_RS04720 and MMP_RS04725 are separated by 38 nucleotides MMP_RS04705: MMP_RS04705 - ribonuclease Z, at 899,977 to 900,903 _RS04705 MMP_RS04710: MMP_RS04710 - hypothetical protein, at 900,933 to 901,325 _RS04710 MMP_RS04715: MMP_RS04715 - CBS domain-containing protein, at 901,511 to 901,891 _RS04715 MMP_RS04720: MMP_RS04720 - DedA family protein, at 901,906 to 902,388 _RS04720 MMP_RS04725: MMP_RS04725 - hypothetical protein, at 902,427 to 902,855 _RS04725 Position (kb) 901 902Strain fitness (log2 ratio) -1 0 1 2at 900.913 kb on - strandat 900.914 kb on + strandat 900.914 kb on + strandat 900.914 kb on + strandat 900.916 kb on + strandat 900.939 kb on - strandat 900.940 kb on + strandat 901.094 kb on - strand, within MMP_RS04710at 901.169 kb on - strand, within MMP_RS04710at 901.272 kb on + strand, within MMP_RS04710at 901.286 kb on - strandat 901.304 kb on - strandat 901.307 kb on - strandat 901.308 kb on + strandat 901.308 kb on + strandat 901.308 kb on + strandat 901.308 kb on + strandat 901.341 kb on - strandat 901.360 kb on - strandat 901.362 kb on - strandat 901.362 kb on - strandat 901.362 kb on - strandat 901.363 kb on + strandat 901.363 kb on + strandat 901.363 kb on + strandat 901.365 kb on + strandat 901.365 kb on + strandat 901.365 kb on + strandat 901.383 kb on - strandat 901.393 kb on - strandat 901.402 kb on + strandat 901.403 kb on - strandat 901.403 kb on - strandat 901.403 kb on - strandat 901.404 kb on + strandat 901.404 kb on + strandat 901.404 kb on + strandat 901.407 kb on - strandat 901.407 kb on - strandat 901.408 kb on + strandat 901.423 kb on + strandat 901.453 kb on - strandat 901.470 kb on - strandat 901.470 kb on - strandat 901.474 kb on - strandat 901.474 kb on - strandat 901.475 kb on + strandat 901.476 kb on - strandat 901.476 kb on - strandat 901.477 kb on + strandat 901.477 kb on + strandat 901.478 kb on - strandat 901.478 kb on - strandat 901.479 kb on + strandat 901.479 kb on + strandat 901.481 kb on - strandat 901.511 kb on + strandat 901.582 kb on - strand, within MMP_RS04715at 901.583 kb on + strand, within MMP_RS04715at 901.583 kb on + strand, within MMP_RS04715at 901.598 kb on + strand, within MMP_RS04715at 901.620 kb on - strand, within MMP_RS04715at 901.626 kb on - strand, within MMP_RS04715at 901.627 kb on + strand, within MMP_RS04715at 901.636 kb on - strand, within MMP_RS04715at 901.648 kb on - strand, within MMP_RS04715at 901.649 kb on + strand, within MMP_RS04715at 901.650 kb on - strand, within MMP_RS04715at 901.702 kb on + strand, within MMP_RS04715at 901.710 kb on - strand, within MMP_RS04715at 901.710 kb on - strand, within MMP_RS04715at 901.729 kb on - strand, within MMP_RS04715at 901.729 kb on - strand, within MMP_RS04715at 901.740 kb on - strand, within MMP_RS04715at 901.750 kb on + strand, within MMP_RS04715at 901.931 kb on + strandat 902.011 kb on + strand, within MMP_RS04720at 902.012 kb on - strand, within MMP_RS04720at 902.016 kb on - strand, within MMP_RS04720at 902.017 kb on + strand, within MMP_RS04720at 902.017 kb on + strand, within MMP_RS04720at 902.337 kb on + strand, within MMP_RS04720at 902.341 kb on - strandat 902.366 kb on - strandat 902.391 kb on - strandat 902.426 kb on + strandat 902.482 kb on + strand, within MMP_RS04725at 902.482 kb on + strand, within MMP_RS04725at 902.482 kb on + strand, within MMP_RS04725at 902.552 kb on - strand, within MMP_RS04725at 902.557 kb on + strand, within MMP_RS04725at 902.575 kb on - strand, within MMP_RS04725at 902.575 kb on - strand, within MMP_RS04725at 902.575 kb on - strand, within MMP_RS04725at 902.643 kb on - strand, within MMP_RS04725at 902.669 kb on - strand, within MMP_RS04725at 902.691 kb on - strand, within MMP_RS04725at 902.692 kb on + strand, within MMP_RS04725at 902.696 kb on - strand, within MMP_RS04725at 902.696 kb on - strand, within MMP_RS04725at 902.696 kb on - strand, within MMP_RS04725at 902.742 kb on + strand, within MMP_RS04725at 902.758 kb on + strand, within MMP_RS04725at 902.758 kb on + strand, within MMP_RS04725at 902.817 kb on - strandat 902.873 kb on - strandat 902.873 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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900,913 - +1.4
900,914 + -0.2
900,914 + -0.1
900,914 + +0.1
900,916 + +0.7
900,939 - +1.1
900,940 + -0.8
901,094 - MMP_RS04710 0.41 +0.4
901,169 - MMP_RS04710 0.60 +0.8
901,272 + MMP_RS04710 0.86 -0.1
901,286 - +0.2
901,304 - -0.5
901,307 - +0.5
901,308 + +0.1
901,308 + -1.0
901,308 + -1.1
901,308 + -0.2
901,341 - -0.8
901,360 - +0.4
901,362 - -0.7
901,362 - -0.7
901,362 - -0.0
901,363 + -0.9
901,363 + -0.2
901,363 + -1.1
901,365 + +0.8
901,365 + +0.4
901,365 + -0.4
901,383 - -0.2
901,393 - +0.7
901,402 + -0.3
901,403 - -0.0
901,403 - -0.3
901,403 - -0.6
901,404 + -0.5
901,404 + +0.4
901,404 + +0.7
901,407 - +0.1
901,407 - +0.4
901,408 + +0.2
901,423 + +0.4
901,453 - +0.8
901,470 - -0.3
901,470 - +0.0
901,474 - +0.5
901,474 - +2.0
901,475 + +1.5
901,476 - +0.1
901,476 - +0.1
901,477 + +0.1
901,477 + +0.0
901,478 - -0.1
901,478 - -0.6
901,479 + -0.2
901,479 + +0.4
901,481 - -0.6
901,511 + -0.2
901,582 - MMP_RS04715 0.19 +0.1
901,583 + MMP_RS04715 0.19 -0.4
901,583 + MMP_RS04715 0.19 +0.1
901,598 + MMP_RS04715 0.23 -0.3
901,620 - MMP_RS04715 0.29 -0.5
901,626 - MMP_RS04715 0.30 -0.1
901,627 + MMP_RS04715 0.30 -0.2
901,636 - MMP_RS04715 0.33 -0.5
901,648 - MMP_RS04715 0.36 +0.5
901,649 + MMP_RS04715 0.36 -0.1
901,650 - MMP_RS04715 0.36 -0.3
901,702 + MMP_RS04715 0.50 -0.4
901,710 - MMP_RS04715 0.52 +0.5
901,710 - MMP_RS04715 0.52 +0.0
901,729 - MMP_RS04715 0.57 -0.3
901,729 - MMP_RS04715 0.57 -0.5
901,740 - MMP_RS04715 0.60 -1.2
901,750 + MMP_RS04715 0.63 -0.3
901,931 + +1.6
902,011 + MMP_RS04720 0.22 -0.1
902,012 - MMP_RS04720 0.22 -0.5
902,016 - MMP_RS04720 0.23 -0.0
902,017 + MMP_RS04720 0.23 +0.4
902,017 + MMP_RS04720 0.23 +0.8
902,337 + MMP_RS04720 0.89 +0.6
902,341 - -0.6
902,366 - -0.4
902,391 - -0.5
902,426 + -0.3
902,482 + MMP_RS04725 0.13 -0.7
902,482 + MMP_RS04725 0.13 +0.0
902,482 + MMP_RS04725 0.13 +0.5
902,552 - MMP_RS04725 0.29 -0.6
902,557 + MMP_RS04725 0.30 -0.6
902,575 - MMP_RS04725 0.34 +0.1
902,575 - MMP_RS04725 0.34 +0.5
902,575 - MMP_RS04725 0.34 -0.1
902,643 - MMP_RS04725 0.50 +0.1
902,669 - MMP_RS04725 0.56 -0.6
902,691 - MMP_RS04725 0.62 +0.3
902,692 + MMP_RS04725 0.62 +0.9
902,696 - MMP_RS04725 0.63 +1.3
902,696 - MMP_RS04725 0.63 +0.8
902,696 - MMP_RS04725 0.63 +0.2
902,742 + MMP_RS04725 0.73 -0.0
902,758 + MMP_RS04725 0.77 +0.6
902,758 + MMP_RS04725 0.77 -0.2
902,817 - +0.3
902,873 - -0.3
902,873 - -0.0

Or see this region's nucleotide sequence