Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03670 and MMP_RS03675 are separated by 36 nucleotides MMP_RS03675 and MMP_RS03680 are separated by 4 nucleotides MMP_RS03680 and MMP_RS03685 are separated by 40 nucleotides
MMP_RS03670: MMP_RS03670 - DUF1890 domain-containing protein, at 691,982 to 692,425
_RS03670
MMP_RS03675: MMP_RS03675 - RimK family alpha-L-glutamate ligase, at 692,462 to 693,340
_RS03675
MMP_RS03680: MMP_RS03680 - hypothetical protein, at 693,345 to 694,367
_RS03680
MMP_RS03685: MMP_RS03685 - Mrp/NBP35 family ATP-binding protein, at 694,408 to 695,277
_RS03685
Position (kb) 693
694
695 Strain fitness (log2 ratio) -1
0
1 at 692.423 kb on - strand at 692.442 kb on + strand at 692.442 kb on + strand at 692.461 kb on - strand at 692.462 kb on + strand at 692.548 kb on - strand at 692.551 kb on - strand, within MMP_RS03675 at 692.552 kb on + strand, within MMP_RS03675 at 692.552 kb on + strand, within MMP_RS03675 at 692.553 kb on - strand, within MMP_RS03675 at 692.609 kb on + strand, within MMP_RS03675 at 692.617 kb on - strand, within MMP_RS03675 at 692.619 kb on - strand, within MMP_RS03675 at 692.619 kb on - strand, within MMP_RS03675 at 692.620 kb on + strand, within MMP_RS03675 at 692.620 kb on + strand, within MMP_RS03675 at 692.628 kb on - strand, within MMP_RS03675 at 692.692 kb on + strand, within MMP_RS03675 at 692.692 kb on + strand, within MMP_RS03675 at 692.697 kb on + strand, within MMP_RS03675 at 692.697 kb on + strand, within MMP_RS03675 at 692.709 kb on + strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.721 kb on - strand, within MMP_RS03675 at 692.830 kb on - strand, within MMP_RS03675 at 692.830 kb on - strand, within MMP_RS03675 at 692.908 kb on + strand, within MMP_RS03675 at 692.983 kb on - strand, within MMP_RS03675 at 693.198 kb on - strand, within MMP_RS03675 at 693.199 kb on + strand, within MMP_RS03675 at 693.240 kb on - strand, within MMP_RS03675 at 693.240 kb on - strand, within MMP_RS03675 at 693.286 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.359 kb on + strand at 693.361 kb on + strand at 693.432 kb on - strand at 693.466 kb on - strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.717 kb on - strand, within MMP_RS03680 at 693.815 kb on + strand, within MMP_RS03680 at 694.043 kb on - strand, within MMP_RS03680 at 694.048 kb on + strand, within MMP_RS03680 at 694.067 kb on + strand, within MMP_RS03680 at 694.067 kb on + strand, within MMP_RS03680 at 694.276 kb on + strand at 694.437 kb on - strand at 694.559 kb on + strand, within MMP_RS03685 at 694.597 kb on - strand, within MMP_RS03685 at 694.597 kb on - strand, within MMP_RS03685 at 694.598 kb on + strand, within MMP_RS03685 at 694.599 kb on - strand, within MMP_RS03685 at 694.606 kb on - strand, within MMP_RS03685 at 694.607 kb on + strand, within MMP_RS03685 at 694.627 kb on - strand, within MMP_RS03685 at 694.742 kb on + strand, within MMP_RS03685 at 694.819 kb on - strand, within MMP_RS03685 at 695.149 kb on - strand, within MMP_RS03685 at 695.172 kb on - strand, within MMP_RS03685 at 695.173 kb on + strand, within MMP_RS03685 at 695.289 kb on - strand at 695.311 kb on - strand at 695.311 kb on - strand at 695.311 kb on - strand at 695.312 kb on + strand at 695.316 kb on + strand at 695.316 kb on + strand at 695.327 kb on - strand at 695.327 kb on - strand at 695.327 kb on - strand at 695.328 kb on + strand at 695.328 kb on + strand at 695.328 kb on + strand at 695.330 kb on - strand at 695.331 kb on + strand at 695.331 kb on + strand at 695.331 kb on + strand at 695.334 kb on - strand at 695.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 692,423 - +0.4 692,442 + -0.5 692,442 + +0.1 692,461 - +0.2 692,462 + -0.5 692,548 - -0.4 692,551 - MMP_RS03675 0.10 -0.4 692,552 + MMP_RS03675 0.10 +0.4 692,552 + MMP_RS03675 0.10 -0.4 692,553 - MMP_RS03675 0.10 -0.3 692,609 + MMP_RS03675 0.17 +1.4 692,617 - MMP_RS03675 0.18 -0.3 692,619 - MMP_RS03675 0.18 +0.3 692,619 - MMP_RS03675 0.18 +0.2 692,620 + MMP_RS03675 0.18 +1.0 692,620 + MMP_RS03675 0.18 -0.3 692,628 - MMP_RS03675 0.19 +0.3 692,692 + MMP_RS03675 0.26 -0.1 692,692 + MMP_RS03675 0.26 -0.1 692,697 + MMP_RS03675 0.27 +0.4 692,697 + MMP_RS03675 0.27 -0.2 692,709 + MMP_RS03675 0.28 +0.8 692,721 - MMP_RS03675 0.29 +0.3 692,721 - MMP_RS03675 0.29 +1.2 692,721 - MMP_RS03675 0.29 -0.0 692,721 - MMP_RS03675 0.29 +0.2 692,830 - MMP_RS03675 0.42 -0.5 692,830 - MMP_RS03675 0.42 +0.2 692,908 + MMP_RS03675 0.51 -0.1 692,983 - MMP_RS03675 0.59 -0.5 693,198 - MMP_RS03675 0.84 +0.4 693,199 + MMP_RS03675 0.84 -0.3 693,240 - MMP_RS03675 0.89 +0.2 693,240 - MMP_RS03675 0.89 +0.3 693,286 + -0.3 693,359 + -0.2 693,359 + -0.6 693,359 + +0.4 693,359 + +0.4 693,361 + -0.2 693,432 - +0.5 693,466 - MMP_RS03680 0.12 +0.1 693,467 + MMP_RS03680 0.12 -0.2 693,467 + MMP_RS03680 0.12 -0.3 693,467 + MMP_RS03680 0.12 +0.8 693,717 - MMP_RS03680 0.36 -0.1 693,815 + MMP_RS03680 0.46 -0.7 694,043 - MMP_RS03680 0.68 -0.4 694,048 + MMP_RS03680 0.69 -0.0 694,067 + MMP_RS03680 0.71 -0.7 694,067 + MMP_RS03680 0.71 -0.3 694,276 + -0.3 694,437 - -0.8 694,559 + MMP_RS03685 0.17 +0.0 694,597 - MMP_RS03685 0.22 -0.3 694,597 - MMP_RS03685 0.22 -0.4 694,598 + MMP_RS03685 0.22 -0.1 694,599 - MMP_RS03685 0.22 -0.0 694,606 - MMP_RS03685 0.23 -0.3 694,607 + MMP_RS03685 0.23 +0.0 694,627 - MMP_RS03685 0.25 +0.2 694,742 + MMP_RS03685 0.38 +0.4 694,819 - MMP_RS03685 0.47 +0.9 695,149 - MMP_RS03685 0.85 +0.1 695,172 - MMP_RS03685 0.88 +0.3 695,173 + MMP_RS03685 0.88 -0.4 695,289 - +0.4 695,311 - -0.1 695,311 - +0.9 695,311 - -0.1 695,312 + -1.0 695,316 + -0.2 695,316 + -0.1 695,327 - +0.0 695,327 - -0.9 695,327 - -0.1 695,328 + +0.2 695,328 + -0.1 695,328 + -0.2 695,330 - -0.6 695,331 + -0.1 695,331 + +0.4 695,331 + -0.4 695,334 - -0.5 695,335 + +0.2
Or see this region's nucleotide sequence