Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02985

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02975 and MMP_RS02980 are separated by 63 nucleotidesMMP_RS02980 and MMP_RS02985 are separated by 19 nucleotidesMMP_RS02985 and MMP_RS02990 are separated by 41 nucleotides MMP_RS02975: MMP_RS02975 - DUF2124 domain-containing protein, at 563,258 to 563,740 _RS02975 MMP_RS02980: MMP_RS02980 - ATP-grasp domain-containing protein, at 563,804 to 564,712 _RS02980 MMP_RS02985: MMP_RS02985 - hypothetical protein, at 564,732 to 565,655 _RS02985 MMP_RS02990: MMP_RS02990 - AMP-binding protein, at 565,697 to 567,346 _RS02990 Position (kb) 564 565 566Strain fitness (log2 ratio) -1 0 1at 563.772 kb on + strandat 563.772 kb on + strandat 563.776 kb on - strandat 563.776 kb on - strandat 563.887 kb on - strandat 564.120 kb on - strandat 564.213 kb on - strandat 564.422 kb on - strandat 564.495 kb on - strandat 564.495 kb on - strandat 564.512 kb on - strandat 564.537 kb on - strandat 564.553 kb on - strandat 564.569 kb on - strandat 564.569 kb on - strandat 564.588 kb on - strandat 564.680 kb on + strandat 564.696 kb on + strandat 564.748 kb on + strandat 564.972 kb on - strand, within MMP_RS02985at 565.041 kb on + strand, within MMP_RS02985at 565.269 kb on - strand, within MMP_RS02985at 565.490 kb on - strand, within MMP_RS02985at 565.568 kb on - strandat 565.603 kb on + strandat 565.609 kb on - strandat 565.646 kb on - strandat 565.649 kb on + strandat 565.649 kb on + strandat 565.649 kb on + strandat 565.649 kb on + strandat 565.668 kb on + strandat 565.692 kb on + strandat 565.693 kb on - strandat 565.694 kb on + strandat 565.695 kb on - strandat 565.819 kb on - strandat 565.819 kb on - strandat 565.867 kb on - strand, within MMP_RS02990at 565.875 kb on - strand, within MMP_RS02990at 565.972 kb on + strand, within MMP_RS02990at 565.998 kb on - strand, within MMP_RS02990at 566.345 kb on + strand, within MMP_RS02990at 566.362 kb on + strand, within MMP_RS02990at 566.362 kb on + strand, within MMP_RS02990at 566.365 kb on - strand, within MMP_RS02990at 566.376 kb on + strand, within MMP_RS02990at 566.489 kb on + strand, within MMP_RS02990at 566.500 kb on + strand, within MMP_RS02990at 566.526 kb on + strand, within MMP_RS02990

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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563,772 + +0.3
563,772 + -0.2
563,776 - +0.3
563,776 - -0.0
563,887 - -0.6
564,120 - +0.2
564,213 - +0.8
564,422 - +1.6
564,495 - +0.0
564,495 - +1.1
564,512 - +0.8
564,537 - +0.3
564,553 - -0.1
564,569 - +0.7
564,569 - -0.0
564,588 - +1.1
564,680 + +0.0
564,696 + +0.3
564,748 + +0.6
564,972 - MMP_RS02985 0.26 -0.3
565,041 + MMP_RS02985 0.33 +0.1
565,269 - MMP_RS02985 0.58 -0.3
565,490 - MMP_RS02985 0.82 -0.5
565,568 - +0.6
565,603 + -0.3
565,609 - +0.5
565,646 - +0.4
565,649 + -0.7
565,649 + -0.4
565,649 + -0.0
565,649 + +0.8
565,668 + -0.1
565,692 + -0.4
565,693 - -0.0
565,694 + -0.5
565,695 - +0.1
565,819 - +0.4
565,819 - +0.3
565,867 - MMP_RS02990 0.10 -0.1
565,875 - MMP_RS02990 0.11 -0.1
565,972 + MMP_RS02990 0.17 -0.3
565,998 - MMP_RS02990 0.18 +1.0
566,345 + MMP_RS02990 0.39 +0.2
566,362 + MMP_RS02990 0.40 +0.7
566,362 + MMP_RS02990 0.40 -0.0
566,365 - MMP_RS02990 0.40 +0.5
566,376 + MMP_RS02990 0.41 +0.4
566,489 + MMP_RS02990 0.48 +0.0
566,500 + MMP_RS02990 0.49 -0.3
566,526 + MMP_RS02990 0.50 -0.7

Or see this region's nucleotide sequence